Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1401 ATGAAAGATTCAACAGAAACAGATGCTATCAGCGGTTCCCTGAACCTCCTGAGTACTCTTCTCGACTCGGAGCTCCCGAGCGTGAGAAACTTCAAAGGAAAATGGTCACTCGCCCGAGTCAAACTCACCCAACTCCAAACCCACCTCACCGATTTCTCCGCCGAGTTCCCAAACGCCTCCACATCGAACCCCCTCTCCTTCCACCTCCTCCACTCAATCTCCCAAACCCTCAACGACGCCGTTTCGCTCTCCAAAACATGCCAACCCGAAACCCTCCCAAACGGAAAACTCAAAACCCAAAGCGACCTGAATTCCCTCCTCGCCACCCTCGACCGCCACGTCAGCGACTGCGACATCCTCTTCCGCAGCGGCCTTCTCCTCGAAAATAGCGTCTCCGTTTCCGTCTCTAAACGCGAAGCCATCCGCTCCGAATCGCGTAGCCTAATAACCCGTCTCCAAATCGGGTCACCCGAATCCAAAGCCTCCGCGATGGACTCCTTATTGGGGCTTCTCCAAGAAGACGACAAAAACGTGACCATCGCGGTGGCGCAGGGAGTCGTTCCCGTGCTCGTGCGTCTACTCGATTCCTCCCCATCCGAAACGAAAGAGAAAACCGTCGCCACCATCTCAAAAATCTCCACCGTGGAAAGCGCGAAAAGCGTTCTTCTCGCTGAGGGTTTACTCCTTCTGAACCACTTGCTTAGGGTTTTGGATTCTGGAAGTGGCTTCGCTATTGAGAAAGCATGCATCGCGCTTCGGGCGTTGAGTTTGACGAAGGAGAACGCTAGGGCGATTGGCTCGCGCGGCGGAATCTCGTCGCTGCTCGAGATCTGCCAGGCTGGCACCCCCGGCGCACAGGCTTCCGCCGCCGCTGTGCTGCGAAACCTCGCCGCTTTTGAGGAAATTAGGGTTAATTTTGTTGAGGAGAACGCGGTGGTGGTTCTGATTGCCTTGGCTTCCTCCGGGACAGCGGTGGCGCGTGAGAATGCGGTCGGCTGTTTGTCGAATTTGACTAATTCGGGTTCGTCGGAGGAGGCCGATGGTTTGTTGAATTTGAGGGTTATGGTGGTGAAAGAAGGTGGAGTTGAGTGTTTGAAGAATTACTGGGATTCAGGGAATCAAATTCAGAGTCTTGAAGTGGCTGTGGAGATGCTGCGTCATTTGGCTGAAAGTGGTCCAATTGGTGAGGTTCTTGTGGGTGAAGGTTTTGTTCAGAGGCTTGTTGGGGTGCTGAATTGTGAGGTTCTGGCTGTTCGGATTGCAGCGGCGAGGGCGGTTTACGCCTTAGGATTGAACAGCGGGAGGGCGAGGAAGGAGATGGGGGAATTGGGGTGTGTTCTGGGTTTGATTAAAATGTTAGATGGGAAAGGTGTGGAAGAGAAAGAAGCTTCTGCGATGGCATTGTCAGTGCTGCTGATGCACCCGGCGAATCGAAGAATTTTCCGCAAGGACGAAAGAGGAGTTGTGAGTGCTGTTCATTTGTTGAACCCTTCGTTGCAGGGGTTGGATAAGAAGTACCCTGTTTCGTTACTCGCTTTGCTTGTTCATTCCAAGAGTTGCAGGAAGCAAATGGTGGCTGCTGGAGCTTGTGTACATACGCAGAAGCTTGTGGAAATGGATGTTCCCGGGTCCAAGAAACTCTTGGAGAGTCTTGGCCGTGGTAAGATTTGGGGTGTTTTTGCTAGACCCTAG 1692 0.5313 MKDSTETDAISGSLNLLSTLLDSELPSVRNFKGKWSLARVKLTQLQTHLTDFSAEFPNASTSNPLSFHLLHSISQTLNDAVSLSKTCQPETLPNGKLKTQSDLNSLLATLDRHVSDCDILFRSGLLLENSVSVSVSKREAIRSESRSLITRLQIGSPESKASAMDSLLGLLQEDDKNVTIAVAQGVVPVLVRLLDSSPSETKEKTVATISKISTVESAKSVLLAEGLLLLNHLLRVLDSGSGFAIEKACIALRALSLTKENARAIGSRGGISSLLEICQAGTPGAQASAAAVLRNLAAFEEIRVNFVEENAVVVLIALASSGTAVARENAVGCLSNLTNSGSSEEADGLLNLRVMVVKEGGVECLKNYWDSGNQIQSLEVAVEMLRHLAESGPIGEVLVGEGFVQRLVGVLNCEVLAVRIAAARAVYALGLNSGRARKEMGELGCVLGLIKMLDGKGVEEKEASAMALSVLLMHPANRRIFRKDERGVVSAVHLLNPSLQGLDKKYPVSLLALLVHSKSCRKQMVAAGACVHTQKLVEMDVPGSKKLLESLGRGKIWGVFARP* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1401 563 PANTHER BNAC03G16340D PROTEIN 15 563 - -
Gso6g1401 563 SUPERFAMILY ARM repeat 147 501 IPR016024 -
Gso6g1401 563 Gene3D - 373 550 IPR011989 -
Gso6g1401 563 Gene3D - 135 372 IPR011989 -
Gso6g1401 563 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 15 563 - -
Gso6g1401 563 SMART arm_5 299 339 IPR000225 GO:0005515
Gso6g1401 563 SMART arm_5 391 431 IPR000225 GO:0005515
Gso6g1401 563 SMART arm_5 432 473 IPR000225 GO:0005515
Gso6g1401 563 SMART arm_5 258 298 IPR000225 GO:0005515
Gso6g1401 563 SMART arm_5 174 214 IPR000225 GO:0005515
Gso6g1401 563 Pfam Armadillo/beta-catenin-like repeat 175 213 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1401 Gso-Chr6 13907518 13909772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1401 146 323 U-box Gene Family AT1G23030 29.775 1.82e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1401 - - gmx:100807228 998.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1401 6 13907518 13909772 Gso6g1401 6 13907518 13909772 ECH