Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1399 ATGGCAGCTTTTTCATACCAATACCATCCTTTTCTTGTTGACCCTGCATTCTTTCCCAACAACTTAAACACTCCTAACTCTCCTCCTCCTCCTCTTCCTTCTCAGTTTCAACAACTCCCTCATGAAACATCATCTTTTAATGTCACAAACCAGGAGACTAGCTGTGTTGACCAGAGCTCCAAGATCACCATCAGTGACAATGAGCCTTCTGTCACTAAAAACCTTAGCCCTCAGTCCTCCATGGTAGTCGACAAGCTTGAAACTGGGGAGCAGGTCACTCAGAAGGTGAACATTCCTGTGGACAAGAAAAGGAGAACTAGAAATGGTTCTTCCTTCACCAGTAACCCCCAATCCAAGGATACTGCAACAGAAGGGAAAAACAAGAAACAAAGGAAGAACAATGGTGGGTTGAAAGAAGAGGACAAGGCAAAAGAAGAGAAGAAGGATCAGAGAAAGTGTCCTGAAGAGCCCCCAACAGGCTATATCCACGTCAGAGCAAGAAGGGGTCAGGCAACGGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAGATAAGTGAAAGGATGAAGGTGTTGCAACGGCTTGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTTGAGTTCTTGTCAATGAAGCTTGCTTCGGTGAATCCCATGTTTTATGACTTGGCAACGGATCTAGACACCCTCTTGGTTAGGCCAGAGAAACTAAATAGCATGGCATCACCATCACCACTACCATCAATGTCACATTGCAACAGCCCCAACAACCAAGCCACAACTTTTGCTGATACAACCACCATGACCCCCACCAACATCTTCCACACTACTAGTGACTATCTTTTGGATAATTCAGTCTCATTTTTTCTTCAAGGGCAGAGGCCAAATGTGTTATCTGAGGAGGATACCGGTAGTCATTTCTGGGACGCAGAGGACCAGCGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATGTTCCTTTCATTAA 1050 0.4457 MAAFSYQYHPFLVDPAFFPNNLNTPNSPPPPLPSQFQQLPHETSSFNVTNQETSCVDQSSKITISDNEPSVTKNLSPQSSMVVDKLETGEQVTQKVNIPVDKKRRTRNGSSFTSNPQSKDTATEGKNKKQRKNNGGLKEEDKAKEEKKDQRKCPEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDLATDLDTLLVRPEKLNSMASPSPLPSMSHCNSPNNQATTFADTTTMTPTNIFHTTSDYLLDNSVSFFLQGQRPNVLSEEDTGSHFWDAEDQRQKFLHPYGFSNNLCSFH* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1399 349 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 349 - -
Gso6g1399 349 CDD bHLH_AtBPE_like 160 245 - -
Gso6g1399 349 Gene3D - 167 240 IPR036638 GO:0046983
Gso6g1399 349 MobiDBLite consensus disorder prediction 49 95 - -
Gso6g1399 349 SMART finulus 176 226 IPR011598 GO:0046983
Gso6g1399 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 220 IPR011598 GO:0046983
Gso6g1399 349 Pfam Helix-loop-helix DNA-binding domain 174 221 IPR011598 GO:0046983
Gso6g1399 349 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 349 IPR024097 GO:0006355
Gso6g1399 349 MobiDBLite consensus disorder prediction 49 178 - -
Gso6g1399 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 237 IPR036638 GO:0046983
Gso6g1399 349 MobiDBLite consensus disorder prediction 122 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1399 Gso-Chr6 13855951 13858914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1399 125 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 65.942 3.85e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso6g1399 HLH 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1399 - - gmx:100806696 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1399 6 13855951 13858914 Gso6g1399 6 13855951 13858914 ECH