Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1397 ATGAAGTGGCCAACATGGAAGTCCAAGTCCAACACCACCATGGCACTAGCTGCGGTGTTGCTTCACCTGAGTTTTTCATTGGAAGTGTTTTGTCTCCCTTCTCATGCAGACACAATTGCTTTGCTTCCCGGCCAACCCCACGTAAGCTTTCAACAGTTCTCAGGATATGTCACAGTTGATGACAAGAAACACAAGTCTCTCTTTTACTATTTTGCTGAGGCAGAAACTGATCCATCTTCAAAGCCTCTTGTTCTGTGGCTCAATGGAGGACCTGGTTGTTCTTCTCTGGGAGTTGGAGCATTCTCAGAAAATGGACCCTTTAGACCAAATGAAGAATTTCTGATTAAAAATGATTATAGTTGGAATAAAGAGGCAAACATGTTGTATTTGGAGACACCAGTTGGAGTGGGGTTCTCCTATGCTAAAGGTAGCTCCTCCTATATGACAGTGAATGACGAGGCAACAGCCAGGGACAACCTTGTATTCTTGCTACGATGGTTCAACAAGTTCCCTCAGTACAAGAGCAGAGATTTGTTTCTAACTGGGGAAAGCTATGCTGGTCATTATGTTCCTCAACTTGCAAAGCTCATGGTTGAAATGAACACAAAGAACAAGATATTCAATCTAAAAGGCATTGCCTTGGGTAATCCAGTTCTAGAATATGCCACTGACTTCAATTCAAGGGCTGAATTCTTCTGGTCTCATGGACTAATATCAGACTCAACCTACAACATGTTCACCAGAGTATGTAACTATTCTAGGTACGTGAGTGAGTACTATAGGGACTCGGTTTCGCCTCTTTGTTCAAAGGTTATGAGCCAAGTGAGCAGAGAAACCAGTAAATTTGTGGACAAATATGATGTCACACTTGATGTTTGCATTTCCTCAGTGCTATCACAATCCAAAGTTATTTGTCCTCAATCCCAAGAAGCAAATGAGAGCATAGATGTGTGTGTAGATGACAAGGTTACAAACTACTTAAACAGGAGAGATGTACAAGAGGCACTTCATGCAAAGCTCGTTGGCGTTCGCAAGTGGGAAGTTTGCAGCAACATACTGGATTATGATATGCTCAACCTGGAAGTGCCTACACTACTTGTTGTTGGATCACTGATAAAAGCTGGAGTTAAGGTCTTAATTTACAGTGGAGATCAAGATTCTGTAATTCCACTGACTGGAAGCCGTACCTTAGTTCAGAAGTTGGCAAGAAAATTAGGACTGAATTCAACAGTCCCTTACAGAGTATGGTTTGAAGGCCAACAGGTTGGTGGATGGACTCAAGGATATGGCAATATCCTCTCATTTGCTACTGTTAGAGGTGCCTCCCATGAAGCCCCTTTCTCACAACCTGAAAGATCACTTGTGCTATTCAAGTCATTCTTGGAAGGCAGGCCTTTACCTGATGCTTTCTGA 1413 0.426 MKWPTWKSKSNTTMALAAVLLHLSFSLEVFCLPSHADTIALLPGQPHVSFQQFSGYVTVDDKKHKSLFYYFAEAETDPSSKPLVLWLNGGPGCSSLGVGAFSENGPFRPNEEFLIKNDYSWNKEANMLYLETPVGVGFSYAKGSSSYMTVNDEATARDNLVFLLRWFNKFPQYKSRDLFLTGESYAGHYVPQLAKLMVEMNTKNKIFNLKGIALGNPVLEYATDFNSRAEFFWSHGLISDSTYNMFTRVCNYSRYVSEYYRDSVSPLCSKVMSQVSRETSKFVDKYDVTLDVCISSVLSQSKVICPQSQEANESIDVCVDDKVTNYLNRRDVQEALHAKLVGVRKWEVCSNILDYDMLNLEVPTLLVVGSLIKAGVKVLIYSGDQDSVIPLTGSRTLVQKLARKLGLNSTVPYRVWFEGQQVGGWTQGYGNILSFATVRGASHEAPFSQPERSLVLFKSFLEGRPLPDAF* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1397 470 SUPERFAMILY alpha/beta-Hydrolases 45 467 IPR029058 -
Gso6g1397 470 Gene3D - 318 354 - -
Gso6g1397 470 Gene3D alpha/beta hydrolase 34 295 IPR029058 -
Gso6g1397 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Gso6g1397 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Gso6g1397 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Gso6g1397 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 433 446 IPR001563 GO:0004185|GO:0006508
Gso6g1397 470 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 468 IPR001563 GO:0004185|GO:0006508
Gso6g1397 470 PANTHER CARBOXYPEPTIDASE 31 468 - -
Gso6g1397 470 Gene3D - 365 463 - -
Gso6g1397 470 Pfam Serine carboxypeptidase 44 463 IPR001563 GO:0004185|GO:0006508
Gso6g1397 470 ProSitePatterns Serine carboxypeptidases, histidine active site. 433 450 IPR033124 GO:0004185
Gso6g1397 470 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1397 Gso-Chr6 13796063 13799586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1397 326 466 Calmodulin-binding Proteins AT2G22960 28.369 5.25e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1397 K16297 - gmx:100790287 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1397 6 13796063 13799586 Gso6g1397 6 13796063 13799586 ECH