Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1395 ATGATGTCGAGAATAAACAACAACGGCGTTGCCTGGATGGGCGAACGAGAAGACGAAAACTCTCGAAACCACAACATCATACCCACCGACACAACCACAACAAACACAGGTTTCGTCGAAACCACAAACAACGACTTAGGTTCTCTCTGCGCCTTCAAGCCCATGCTCGACGTCGACGACGAATGGTACAACAACATCACCAACCACCACCACCACCACCACCACCACCACGACATGACCTTCGACCCCGACAACCTCTTACTCCACGCTGCCACCGCCGTGGACTCCTCCTCCTCCTGCTCCCCCTACTTTTTCCCTCCCAATCCCAAACCCCCCTTTCTTGTCAACCCCTTCGATATGGGCTTTCTTGACCCTCAAGCTTCTTCTTCTCCCTCTCTACCCCTTCTCCCCGAATCAACACACTTCACACCCCCTCACACCACCACCACCGCTTTCGCCGGCTTCCAGAGCCGCCTCCAAGAGAGTGGTTCTTCAAAATCTCTCTTTTTGAGGCCTCTCGAGTCGCTGCCACCCTCCGGGGCGCAACCCACGCTGTTTCAGAAGAGAGCCGCGCTTAGAAAAAACATGGAAGGGAGTGATAATAATAAGAAGAAGAGGAAGGAGAAGGAGAAGGACGAGGAGGTTGAGGATTTGAGTTTCGATGGCTCCGGGTTGAACTATGATTCTGATGACTTGACTGAGAGCAATTATAATAATGTTTCTGAGGGTAATACTGGGAAGAATGGTGGGGTTAGTTCCAACGCGAACAGCACCGTCATCACCGGTTTGGATCAAAAAGGGAAGAAGAAGGGAATGCCTGCTAAGAATTTGATGGCCGAACGACGCCGTAGGAAGAAGCTCAATGATAGACTCTACATGTTGAGGTCCGTTGTTCCCAAGATTAGCAAAATGGACAGGGCTTCAATTCTTGGGGATGCAATTGAGTATCTGAAGGAGCTTCTGCAAAGGATCAATGATCTGCATAACGAGTTGGAATCGACACCAGTGGGTTCTTCACTCACTCCTGTCTCAAGTTTCCATCCTTTGACGCCTACTCCTCCTACGCTGCCAAGCCGAATCAAGGAAGAACTGTGCCCCAGCTCATTGCCCAGCCCCAATGGCCAACCTGCTAGGGTTGAGGTTCGGCTGCGCGAAGGAAGGGCTGTTAACATCCACATGTTTTGTGCCCGCAAGCCTGGTCTGTTGCTCTCAACCATGAGGGCTTTGGATAACCTTGGATTAGACATTCAGCAGGCTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTCTTGGATTCAGCTGGCTACAATGGCATGATGTAA 1389 0.5054 MMSRINNNGVAWMGEREDENSRNHNIIPTDTTTTNTGFVETTNNDLGSLCAFKPMLDVDDEWYNNITNHHHHHHHHHDMTFDPDNLLLHAATAVDSSSSCSPYFFPPNPKPPFLVNPFDMGFLDPQASSSPSLPLLPESTHFTPPHTTTTAFAGFQSRLQESGSSKSLFLRPLESLPPSGAQPTLFQKRAALRKNMEGSDNNKKKRKEKEKDEEVEDLSFDGSGLNYDSDDLTESNYNNVSEGNTGKNGGVSSNANSTVITGLDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPVGSSLTPVSSFHPLTPTPPTLPSRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGYNGMM* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1395 462 CDD ACT_UUR-ACR-like 391 451 - -
Gso6g1395 462 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 274 339 IPR036638 GO:0046983
Gso6g1395 462 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 320 IPR011598 GO:0046983
Gso6g1395 462 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 62 462 - -
Gso6g1395 462 CDD bHLH_AtAMS_like 274 339 - -
Gso6g1395 462 MobiDBLite consensus disorder prediction 193 218 - -
Gso6g1395 462 Pfam Helix-loop-helix DNA-binding domain 278 320 IPR011598 GO:0046983
Gso6g1395 462 SMART finulus 277 326 IPR011598 GO:0046983
Gso6g1395 462 PANTHER BHLH TRANSCRIPTIONAL FACTOR 62 462 - -
Gso6g1395 462 Gene3D - 265 334 IPR036638 GO:0046983
Gso6g1395 462 Coils Coil 310 334 - -
Gso6g1395 462 MobiDBLite consensus disorder prediction 192 230 - -
Gso6g1395 462 MobiDBLite consensus disorder prediction 16 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1395 Gso-Chr6 13749680 13753953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1395 166 435 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 68.248 5.61e-113 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso6g1395 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1395 - - gmx:100217341 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1395 6 13749680 13753953 Gso6g1395 6 13749680 13753953 ECH
Gso4g1691 4 46906740 46910862 Gso6g1395 6 13749680 13753953 GST
Gso5g1710 5 40372875 40377372 Gso6g1395 6 13749680 13753953 PCT
Gso6g1395 6 13749680 13753953 Gso5g1710 5 40372875 40377372 PCT