Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1394 ATGGCATCATCGGAGGTGACGATGAAGGGAAATTGCTTGAACCACAACGACGGCGGAGCCACGGAGCCTCATTCGCCGTCCACGGCCAAAGACGCAGAAGCTGCACTTTTCAGGGAACTATGGCACGCATGTGCCGGTCCTCTAGTCACGGTACCGCGGGAAAAAGAGCGCGTGTTTTATTTCCCTCAAGGACATATTGAGCAGGTGGAGGCGTCGACGAATCAGGTGGCGGACCAGCACATGCCGGTTTACGATCTCCCACCCAAGATCCTTTGTCGGGTCATCAACGTGCAGCTGAAGGCCGAGCCCGACACGGATGAGGTGTTTGCTCAGGTGACTTTGCTTCCGGAGCCAAACCAAGATGAGAATGCCGTGGAGAAAGAGCCACCACCACCTCCGCCACCACGGTTTCATGTTCATTCTTTCTGTAAGACTCTGACGGCGTCCGATACGAGTACCCATGGTGGGTTTTCTGTGCTGAGACGACATGCTGATGAATGTCTTCCTCCTCTGGATATGTCGAAGCAGCCACCCACACAGGAATTGGTGGCTAAGGATCTTCATGCAAATGAATGGCGATTTAAACATATCTTTCGAGGTCAACCGCGTAGACACTTGCTTCAGAGTGGTTGGAGTGTTTTTGTCAGCTCCAAAAGGCTTGTTGCTGGGGATGCATTTATATTTCTTAGAGGTGAAAATGGGGAACTTCGTGTTGGTGTCCGACGTGCAATGAGACAGCAGGGTAATGTTCCATCCTCAGTTATCTCAAGCCACAGCATGCATCTCGGTGTCCTTGCAACTGCTTGGCATGCCATCTTGACCGGGACCATCTTCACTGTTTATTACAAACCTAGGACCAGTCCCGCCGAATTTATTGTTCCGTATGATCAATATATGGAGTCTTTAAAAAATAGTTATAGCATCGGGATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCAGAGCAGAGGTTTACTGGTACCGTTGTTGGAATAGAAGATTCTGATCCCAAAAGGTGGAGAGATTCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCCAACACCCCTCGGCCAGAGAGAGTTTCCCCTTGGAAAATAGAGCCGGCTCTTGCTCCCCCGGCTCTAAATCCTCTTTCAATGCCCAGGCCTAAAAGGCCTCGGTCTAATGCAGTTCCTTCATCCCCAGATTCTTCTGTTCTTACTCGAGAAGCATCATCTAAAGTAAGCATAGACCCTTCACCGGCAAATGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTACAGAAAGTAACGAGTTTGATACTGCCGAGAAGTCTGTTGTTTGGCCACCTACTGCAGTAGATGATGAAAAGATGGATGTTTCTACTTCAAGGAGGTATGGTTCAGAGAGCTGGATGTCAATGGGGAGGAATGAGCCTACATATTCGGATCTTCTTTCAGGCTTTGGGACCAGTGGGGATCCTTCTCATTCATCCCTGAAGGATCAAATGAGCCCTGCTTATTCTGCTAGAAAGCAATCATTGGATCATGAAGGCAAACTTCACATGCCTCATCCGTGGCCTGTAATGCCCTCTAGTCTGTCCCTGAACATCTTGGACTCTAATGCAAAAGGTCCTACACATGGTGGTGATACATCTTTCCAAGCTCGAGGGAATTTGAGGTTCAGTGCATTTGGTGAATACCCTGCACTGCATGGTCATAAAGTTGAGGATTCACATGGAAACTTGATGCCACCCCCACCTGCACCCCAAACTCAATATCAGAGTCCTTGTTCAAGAGAGCTTATGTCAAAACATGTATCAGCAAAAACTTGTGAGGCTGTGAAACCAAAAGATGGTGACTGTAAGCTATTTGGCTTCTCACTTATCAGTGGCCCTATCGTACCAGAGCCTTCTTTATCACAAAGAAATGTGAGTGAGCCTGCTGGTCAGATGCATCTTACAGCACACCAACAAAGAACATCTGAAAATGATGAGAAGTCAGATCACTCAAAGGGATCAAGACCTGTAGATGATCTAGTTGTTGATGACCATGACAGACCATTACAGACTTCTCAGTCGCATACTAAAGACGTTCAAGCCAAACCTCTCAGTGGTTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGCATTGCACTTGGTAGATCAGTGGACCTTACAAAGTACAGTGGCTATGATGAATTAGTTGCCGAATTGGATCAGCTGTTTGAATTTGGGGGTGAATTATTGTCAACTAAAAAAGATTGGCTTATCGTCTATACTGATAATGAGGGTGATATGATGCTTGTAGGCGATGATCCATGGCAGGAATTCTGTGCCATGGTTTGCAAAATTTATATCTACCCTAAAGAGGAGATCCAGAAAATGAGCCCAGGTACACTGAGCTCGAAAAATGAAGAGAACCAGTCGGTGATGGCTAGTGATGGTGCAGATGCAAAAGTTGTTAAATGTCAGCCACATCAAAAGTTCAATTCAGAAAATGGCCTTGACGCCTAA 2532 0.4688 MASSEVTMKGNCLNHNDGGATEPHSPSTAKDAEAALFRELWHACAGPLVTVPREKERVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQDENAVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHANEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNSYSIGMRFKMRFEGEEAPEQRFTGTVVGIEDSDPKRWRDSKWRCLKVRWDETSNTPRPERVSPWKIEPALAPPALNPLSMPRPKRPRSNAVPSSPDSSVLTREASSKVSIDPSPANGFPRVLQGQEFSTLRGNFTESNEFDTAEKSVVWPPTAVDDEKMDVSTSRRYGSESWMSMGRNEPTYSDLLSGFGTSGDPSHSSLKDQMSPAYSARKQSLDHEGKLHMPHPWPVMPSSLSLNILDSNAKGPTHGGDTSFQARGNLRFSAFGEYPALHGHKVEDSHGNLMPPPPAPQTQYQSPCSRELMSKHVSAKTCEAVKPKDGDCKLFGFSLISGPIVPEPSLSQRNVSEPAGQMHLTAHQQRTSENDEKSDHSKGSRPVDDLVVDDHDRPLQTSQSHTKDVQAKPLSGSARSCTKVHKKGIALGRSVDLTKYSGYDELVAELDQLFEFGGELLSTKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVCKIYIYPKEEIQKMSPGTLSSKNEENQSVMASDGADAKVVKCQPHQKFNSENGLDA* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1394 843 MobiDBLite consensus disorder prediction 803 843 - -
Gso6g1394 843 ProSiteProfiles PB1 domain profile. 713 795 IPR000270 GO:0005515
Gso6g1394 843 MobiDBLite consensus disorder prediction 663 696 - -
Gso6g1394 843 MobiDBLite consensus disorder prediction 493 518 - -
Gso6g1394 843 SMART B3_2 142 244 IPR003340 GO:0003677
Gso6g1394 843 SUPERFAMILY CAD & PB1 domains 715 790 - -
Gso6g1394 843 Gene3D - 139 244 IPR015300 -
Gso6g1394 843 MobiDBLite consensus disorder prediction 697 711 - -
Gso6g1394 843 ProSiteProfiles B3 DNA-binding domain profile. 142 244 IPR003340 GO:0003677
Gso6g1394 843 Gene3D - 305 375 - -
Gso6g1394 843 PANTHER AUXIN RESPONSE FACTOR 2 16 821 - -
Gso6g1394 843 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 821 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso6g1394 843 MobiDBLite consensus disorder prediction 493 514 - -
Gso6g1394 843 Pfam B3 DNA binding domain 142 243 IPR003340 GO:0003677
Gso6g1394 843 Gene3D - 709 802 - -
Gso6g1394 843 MobiDBLite consensus disorder prediction 376 424 - -
Gso6g1394 843 MobiDBLite consensus disorder prediction 394 416 - -
Gso6g1394 843 MobiDBLite consensus disorder prediction 656 711 - -
Gso6g1394 843 MobiDBLite consensus disorder prediction 803 817 - -
Gso6g1394 843 SUPERFAMILY DNA-binding pseudobarrel domain 138 271 IPR015300 -
Gso6g1394 843 Pfam Auxin response factor 268 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso6g1394 843 Pfam AUX/IAA family 754 798 IPR033389 -
Gso6g1394 843 CDD B3_DNA 140 242 IPR003340 GO:0003677
Gso6g1394 843 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1394 Gso-Chr6 13744254 13749147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1394 1 828 B3 DNA Binding Superfamily AT5G62000 64.658 0.0 1077
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso6g1394 AUX_IAA 1.9e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1394 - - gmx:100803498 1716.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1394 6 13744254 13749147 Gso6g1394 6 13744254 13749147 ECH
Gso4g1692 4 46911414 46916318 Gso6g1394 6 13744254 13749147 GST
Gso5g1709 5 40367291 40372082 Gso6g1394 6 13744254 13749147 PCT
Gso8g0068 8 654367 659176 Gso6g1394 6 13744254 13749147 PCT
Gso6g1394 6 13744254 13749147 Gso5g0398 5 4203303 4205899 PCT
Gso6g1394 6 13744254 13749147 Gso17g1095 17 10411308 10413922 PCT