Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1389 ATGCCTTCTGAAATCATGGAGAAGAGGGGTGCTTCTGCCTCATCTCGCTTTTTGGATGACATTTCCTATGTTTCTGAGAATACTGGATTACGAAAGCCAAAATCTATCCATGACCATTTTCTACAAGGGAAGAGTGAAATGGCGGCATCACCTGGCATCATTTTTAATACTTCGTCACCCCTTGAAACAAATTCAAAAACAGGCTTGTCAATTTCTCAGACTACTCTATCTCGGGAAATTACAGAAGACCTACATTTTGGCAGAGAAACAGGCAATACAGATATGCTGAAGGATTCCACCACAGAATCATTGAATTATCACAAGAGATCATGGTCTAATGTGCATAGGCAGTCAGCATCTGGCTCATATGGTCTAATTGGGAGCAAGATTGTCACCAATGCTGCCTCACGTGAAAGCAGTCTGTTTTCAAGCTCGCTGTCTGACATGTTTAGCCAAAAGTTGAGGTTATTGGGGAATGGAGTGCTGTCTGGTCAACCCATTACAGTTGGTTCCTTTCCTGAGGAAGAACCGTACAAATCTCTTGAAGAAATTGAGGCTGAAACTATTGGAAATCTCCTTCCTGATGAAGATGACCTGTTTTCTGGAGTCACTGATGAGTTAGGATTCAGTACTGGCACTAGAATGAATGATGATTTTGAAGATTTTGATTTGTTCAGCAGCAGTGGAGGCATGGAATTGGAAGGAGATGAACATCTAATTTCCGGAAAAAGAACCAGTTGCGGGGATGAAGATCCTAATTACTTTGGAGTTTCTAAAGGAAAAATTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTAGAAGATTCCGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATATATACTGCCTGCAAGTATCGTGGATTTGTTATGATTTCTTATTATGATCTAAGGGCAGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAGATCTAGGAAACTTGATATACATTATTCAATTCCAAAGGGCAATGCTCCAGAGAAGGATATTGGTCATGGTACACTGATGATATCTGATCTTGATTCATCTGTTCTGAATGATGAACTAAAACAGATTTTTGGGTTTTATGGAGAAATTAGAGAAATCTATGAATATCCACAACTGAATCATGTCAAATTTATTGAATTTTATGATGTCCGGGCTGCGGAAGCTTCTCTTCGTGCATTGAATGGGATCTGCTTTGCTGGGAAGCACATTAAGCTTGAACCTGGTCTTCCCAAGATTGCAACATGTATGATGCAGCAATCACAGAAGGGAAAAGATGAACCTGATTTTGGTCATAGTTTGAGTGACAACATATCCTTAAGGCATAATAAAGCAGGAGTGTCATCTGGATTTATTGCATCTGGTGTCAGCTTGGAAAATGGATATAATCAGGGATTTCGTTCTGAAACACAGCTACCTGCTTTTATGGATAACTCACTGTTTCATGTGAATTCTAGCATTCACAAGACCACAAGAGGGGCATCTGCTGGAAAAGTATCTGGTGTTTTTGAGGCCTGTAATGCTATTGATGCGATGAAATTTGCATCCATTTCGAGGTTCCATCCTCATTCTTTACCTGAATATCGCGAAAGTTTAGCTAATGGCAGTCCTTACAACTTTTCAAGTACCATTAACATGGCTGCCAATATTGGAACTGGATCGACGGAATCATCTGACAGCAGGCACATTCAGGGAATGAGCTCAACTGGGAACCTAGCAGAGTTTAATGCAGCAGGAAATGGAAACCGCCCCCATCATGGACTTTATCATATGTGGAATGGGTCCAACTTGCATCAGCAACCTCCTTCAAATTCCATGCTTTGGCAGAAAATACCATCCTTTGTTAATGGTGCTTGTTCTCCAGGTCTTCCACAGATACCCAGCTTTTCTAGAACACCGCCTCATGTGCTTAGAGCATCTCATATAGACCATCAAGTGGGATCTGCGCCGGTTGTTGCAGCCTCACCCTGGGATAGACAACATTCTTTCTTGGGAGAGTCACCTGATGCATCTGGTTTTAGATTGGGTTCTGTTGGAAGTCCAGGCTTTCATGGTAGCTGGCAGTTGCATCCTCCTGCTTCTCACAATATATTTTCTCATGTTGGTGGGAATGGTACAGAATTGACATCAAATGGTGGGCAGGGCTCTCCTAAGCAGTTGTCACATGTTTTTCCTGGGAGACTTCCCATGACTTTGGTTTCTAAAAACCTCTATTCTCGTAGAAGTGAACCAAACACTAACAACAATGCTGATAAAAAACAATATGTACTTGACCTAGGCCGCATTTTGCGTGGGGATGACAACCGGACAACGCTCATGATAAAAAATATTCCCAATAAGTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGACAAATTATTCCATTCCACCAGGCTTTTCATGGGAAAAAATGGGAGAAATTCAACAGTGAAAAGGTAGCGGTACTCGCCTATGCCCGAATTCAAGGAAAATCTGCTCTTATTGCTCATTTTCAGAATTCAAGCCTAATGAATGAAGATAAACGTTGCCGCCCCATTCTCTTCCATACAGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGTAACAATATTAGAGTGAGGCCTGGAAAAATTCGCATGAATGGTAATGAGGAGAATGGCAGCCAAGGGAATCCTTCATCTTTGGCAAGTGGAGAAGAGTCTGGGAATGGAACAGAATCTACATCGAGCTCTTCAAAAAGTTCTGACTGA 2889 0.4126 MPSEIMEKRGASASSRFLDDISYVSENTGLRKPKSIHDHFLQGKSEMAASPGIIFNTSSPLETNSKTGLSISQTTLSREITEDLHFGRETGNTDMLKDSTTESLNYHKRSWSNVHRQSASGSYGLIGSKIVTNAASRESSLFSSSLSDMFSQKLRLLGNGVLSGQPITVGSFPEEEPYKSLEEIEAETIGNLLPDEDDLFSGVTDELGFSTGTRMNDDFEDFDLFSSSGGMELEGDEHLISGKRTSCGDEDPNYFGVSKGKIPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKYRGFVMISYYDLRAAQNAMKALQNRSLRSRKLDIHYSIPKGNAPEKDIGHGTLMISDLDSSVLNDELKQIFGFYGEIREIYEYPQLNHVKFIEFYDVRAAEASLRALNGICFAGKHIKLEPGLPKIATCMMQQSQKGKDEPDFGHSLSDNISLRHNKAGVSSGFIASGVSLENGYNQGFRSETQLPAFMDNSLFHVNSSIHKTTRGASAGKVSGVFEACNAIDAMKFASISRFHPHSLPEYRESLANGSPYNFSSTINMAANIGTGSTESSDSRHIQGMSSTGNLAEFNAAGNGNRPHHGLYHMWNGSNLHQQPPSNSMLWQKIPSFVNGACSPGLPQIPSFSRTPPHVLRASHIDHQVGSAPVVAASPWDRQHSFLGESPDASGFRLGSVGSPGFHGSWQLHPPASHNIFSHVGGNGTELTSNGGQGSPKQLSHVFPGRLPMTLVSKNLYSRRSEPNTNNNADKKQYVLDLGRILRGDDNRTTLMIKNIPNKYTSKMLLVAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFHGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKIRMNGNEENGSQGNPSSLASGEESGNGTESTSSSSKSSD* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1389 962 Gene3D - 353 448 IPR012677 -
Gso6g1389 962 Gene3D - 264 352 IPR012677 -
Gso6g1389 962 CDD RRM1_MEI2_like 269 344 IPR034453 -
Gso6g1389 962 Pfam RNA recognition motif 2 786 882 IPR007201 -
Gso6g1389 962 SUPERFAMILY RNA-binding domain, RBD 788 873 IPR035979 GO:0003676
Gso6g1389 962 MobiDBLite consensus disorder prediction 928 962 - -
Gso6g1389 962 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 961 - -
Gso6g1389 962 CDD RRM3_MEI2_like 789 874 IPR034454 -
Gso6g1389 962 SUPERFAMILY RNA-binding domain, RBD 267 427 IPR035979 GO:0003676
Gso6g1389 962 SMART rrm1_1 788 866 IPR000504 GO:0003723
Gso6g1389 962 SMART rrm1_1 356 424 IPR000504 GO:0003723
Gso6g1389 962 SMART rrm1_1 271 339 IPR000504 GO:0003723
Gso6g1389 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Gso6g1389 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 336 IPR000504 GO:0003723
Gso6g1389 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Gso6g1389 962 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 961 - -
Gso6g1389 962 MobiDBLite consensus disorder prediction 897 962 - -
Gso6g1389 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1389 Gso-Chr6 13654625 13663313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1389 265 421 Eukaryotic Initiation Factors Gene Family AT3G16380 25.843 6.23e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1389 - - gmx:100801025 1879.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1389 6 13654625 13663313 Gso6g1389 6 13654625 13663313 ECH
Gso4g1697 4 47003243 47011962 Gso6g1389 6 13654625 13663313 GST
Gso8g0063 8 596855 605250 Gso6g1389 6 13654625 13663313 PCT
Gso6g1389 6 13654625 13663313 Gso8g0063 8 596855 605250 PCT