Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1386 ATGGAAGGAAGATCAATATCACATTCTTCTGAAAGAGAAGAGGAATATGATTTGTTCCCAATATATTCTGAAAGGTCTCAGCAAGACATGTCAGCCATGGTTTCTGCTCTCACACAAGTCATTGGTGGCTCCAATAGTGATTCTCTTCAGCAGCATGAAGGCCTTTTAACTTCTTCACATAACAACACCTCAACCCAGAATAATAATGAACAATCCCAAGCACCACAACAAGAACAAGGGAGTGTAAGAAGAAGACACTACAGAGGAGTGAGGCAGCGTCCATGGGGAAAGTGGGCTGCAGAGATTCGCGATCCGAAGAAAGCAGCGAGGGTATGGCTTGGAACCTTTGAAACAGCTGAAGCTGCAGCTCTTGCTTATGATGAAGCTGCTCTTAGATTCAAAGGAAGCAAAGCAAAACTCAATTTCCCTGAAAGGGTTCAAGGCACAGCTAGCGAATTTGGTTACCACCTCACAAATCAGCACAGCACTAGTAGTCATGATCAGCAAGCTTCTAACCCTATTATTACTCCACACTTTGCTACTACTCAAGAAACTTATTCACCAAGTCATCACTTTCAATATGCACAACAACAACTCATGGGTGGTGGGAGTAACAGCTTCAATAACAACCAAGATATGCTTCGTTTCTATGGGGGACATAACATGTTTGTTTCTTCTCAGCAATCTGCATCATCGTCTTCTTCCACTGCACTGTCTCAGAATCAGCAGGATGAGTTGCTGAGATTTTCGATGCAATTTGGAGCTTCTTCTCATTCTGACCATTCAGGGAATTGGAGGGGTGGACAATGA 810 0.4333 MEGRSISHSSEREEEYDLFPIYSERSQQDMSAMVSALTQVIGGSNSDSLQQHEGLLTSSHNNTSTQNNNEQSQAPQQEQGSVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTASEFGYHLTNQHSTSSHDQQASNPIITPHFATTQETYSPSHHFQYAQQQLMGGGSNSFNNNQDMLRFYGGHNMFVSSQQSASSSSSTALSQNQQDELLRFSMQFGASSHSDHSGNWRGGQ* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1386 269 MobiDBLite consensus disorder prediction 1 20 - -
Gso6g1386 269 SMART rav1_2 86 149 IPR001471 GO:0003700|GO:0006355
Gso6g1386 269 CDD AP2 86 144 IPR001471 GO:0003700|GO:0006355
Gso6g1386 269 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700|GO:0006355
Gso6g1386 269 SUPERFAMILY DNA-binding domain 86 144 IPR016177 GO:0003677
Gso6g1386 269 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700|GO:0006355
Gso6g1386 269 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 255 - -
Gso6g1386 269 MobiDBLite consensus disorder prediction 57 80 - -
Gso6g1386 269 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Gso6g1386 269 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Gso6g1386 269 Pfam AP2 domain 86 135 IPR001471 GO:0003700|GO:0006355
Gso6g1386 269 MobiDBLite consensus disorder prediction 248 269 - -
Gso6g1386 269 MobiDBLite consensus disorder prediction 1 22 - -
Gso6g1386 269 PANTHER DNA-BINDING DOMAIN 21 255 IPR044808 GO:0003700|GO:0009873
Gso6g1386 269 MobiDBLite consensus disorder prediction 57 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1386 Gso-Chr6 13598311 13601143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1386 17 160 AP2-EREBP Transcription Factor Family AT5G61890 65.986 3.19e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso6g1386 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1386 - - gmx:100787091 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1386 6 13598311 13601143 Gso6g1386 6 13598311 13601143 ECH
Gso4g1702 4 47064904 47066126 Gso6g1386 6 13598311 13601143 GST
Gso5g1703 5 40285849 40289432 Gso6g1386 6 13598311 13601143 PCT
Gso6g1386 6 13598311 13601143 Gso5g1703 5 40285849 40289432 PCT