Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1385 ATGCCTTTATCTCCACCCAAACAGTACCACACACACGCACCTTGCACTCCTCACTTTCCAACCCTCATGGATCCAGACGCATTCACCGCCAGCCTATTCAAGTGGGACCCACGCACCGTCCTCCCGCCCGCGCCCCCCCCGCCGCCCCCGCGACCTCCCCTCCTCGAATACGCGGTCGCTCCGCCGCCAGTGACCCCGTCGTTCCATCCCTCGAGGGCGGCGGCGCCGCGCGAGCTCGGAGGACTGGAGGAGCTCTTTCAGGCTTACGGCATCCGCTACTACACGGCGGCGAAGATCGCCGAGCTCGGGTTCACGGTCAGCACGCTGGTGGACATGAAGGACGAGGAGCTCGACGACATGATGAACAGCCTCTCCCAGATTTTCCGCTGGGACCTCCTCGTCGGCGAACGCTACGGCATCAAAGCCGCCGTCAGAGCCGAACGACGCCGCGTTGAAGATGACGACATCAAGCGCCGCAATAACAACAACAACCTCCTCTCCGCCGACACCACCACCAACGCCCTCGACGCCCTCTCTCAAGAAGGCTTGTCGGAGGAGCCGGTGATGCAACGAGAGAAGGAGGCGGTGGGGAGCGGGGGAGGGAGCACGTGGGAGGTGGTGGTGGCGGCGGAGGAGAGGAGGAAGCAGCAGAGGAGACGGAGGACGAGGATGAAGACGAATAATCTTCATCACGAAGACAACGAGGAGCTTGAGGATGATGAAGGAGAACAGAATGACGAAGGAAACATTAACACTGGTGGGGGTTGTGAGAGGCAAAGGGAGCATCCTTTCATCGTGACAGAGCCTGGGGAAGTTGCACGTGGAAAGAAGAACGGTTTGGACTATCTGTTTCATCTCTACGAGCAATGCCGTGAGTTCTTGATGCAGGTTCAGGCCATTGCCAAGGACCGCGGTGAAAAATGCCCCACCAAGGTGACAAATCAGGTGTTTAGGTACGCGAAGAAGGCTGGGGCAAGCTACATCAACAAGCCAAAGATGCGACACTACGTGCACTGCTATGCCTTACACTGTCTGGACGAGGAGGTCTCAAACGAGCTTCGAAGGGCGTTCAAGGAGAGAGGGGAGAACGTTGGAGCGTGGAGGCAAGCATGTTACAAGCCCCTTGTGGCCATTGCCGCGCGTCAAGGTTGGGACATTGACGCCATATTCAATGCTCATCCTCGTCTTTCCATTTGGTATGTTCCCACGAAGCTTCGTCAGCTTTGTCACGCTGAGAGAAACAGTGCCGCAGCTTCAAGCTCCGTGTCTGCTGGCAGTGCTCACCTTCCCTTCTAA 1296 0.5818 MPLSPPKQYHTHAPCTPHFPTLMDPDAFTASLFKWDPRTVLPPAPPPPPPRPPLLEYAVAPPPVTPSFHPSRAAAPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDEELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRVEDDDIKRRNNNNNLLSADTTTNALDALSQEGLSEEPVMQREKEAVGSGGGSTWEVVVAAEERRKQQRRRRTRMKTNNLHHEDNEELEDDEGEQNDEGNINTGGGCERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLMQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSAAASSSVSAGSAHLPF* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1385 431 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 252 417 IPR035209 GO:0003677
Gso6g1385 431 Coils Coil 207 227 - -
Gso6g1385 431 MobiDBLite consensus disorder prediction 181 258 - -
Gso6g1385 431 PANTHER PROTEIN LEAFY 23 431 IPR002910 GO:0003677|GO:0006355
Gso6g1385 431 Pfam Floricaula / Leafy protein SAM domain 78 154 IPR035079 -
Gso6g1385 431 Gene3D Protein LEAFY 254 423 IPR038276 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1385 Gso-Chr6 13586776 13589952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1385 23 415 Orphan Transcription Factor Family AT5G61850 66.420 4.87e-166 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Gso6g1385 C_LFY_FLO 6.6e-109 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1385 - - gsj:114416001 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1385 6 13586776 13589952 Gso6g1385 6 13586776 13589952 ECH
Gso4g1706 4 47083633 47086376 Gso6g1385 6 13586776 13589952 GST