Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1362 ATGTCCAACTCCACCACCGGCACCACCGCGGCCTTACCACCGAAGCCCACCTGGGTCCTCCCATACCGAACCGAGAATCTCCGCGAGGTCTACACCCTAAGCCGAAAGCTCGGCCAGGGCCAATTCGGCACAACCTTCCTCTGCACGCACAACGCCACGGGACGCACCTTCGCCTGCAAGTCAATCCCGAAGCGGAAGCTGCTCTGCAAGGAGGACTACGACGACGTATGGAGGGAGATTCAGATAATGCACCACCTCTCCGAGCACCCCAACGTCGTTCGCATCCACGGCACCTACGAGGACGCCGCCTCCGTCCACCTCGTCATGGAGCTCTGCGAGGGAGGGGAGTTGTTCGACAGGATTGTGCAGAAGGGGCACTACAGCGAGCGCCAGGCTGCGAAGCTCATCAAGACCATTGTTGAGGTTGTGGAGGCTTGCCACTCGCTTGGGGTCATGCATAGGGACCTCAAGCCTGAGAACTTTCTCTTTGATACTGTTGAGGAGGGTGCTAAGCTCAAAACTACTGATTTTGGGCTCTCCGTGTTTTATAAGCCAGGTGAAACCTTTTGTGACGTTGTTGGAAGCCCGTACTATGTTGCACCAGAGGTCTTGCGTAAGCATTATGGTCCTGAAGCAGACGTGTGGAGTGCTGGTGTTATTTTGTACATCTTATTAAGTGGGGTGCCACCATTTTGGGCTGAAACTGAGCAGGGGATTTTCCGACAGATTTTGCTAGGAAGAATTGACTTCCAGTCTGAGCCATGGCCTAGCATTTCAGACAGTGCCAAAGATCTAATTCGAAAAATGCTTGATCGGAATCCAAAAACAAGGGTTACAGCTCACCAAGTACTCTGTCACCCATGGATTGTTGATGACAACATTGCACCAGATAAACCTCTTGATTCTGCTGTTTTATCACGCCTGAAGCAGTTCTCTGCAATGAATAAACTTAAAAAGATGGCTTTGCGTGTTATTGCAGAGAGGCTCTCTGAGGAAGAAATTGGTGGTCTGAAGGAATTATTCAGGATGATTGATGCAGATAATAGTGGAACTATAACATTCGATGAGCTAAAAGAAGGCTTAAAGCGAGTAGGATCTGAACTAATGGAGTCTGAAATCAAGGATCTTATGGATGCAGCAGATATTGATAATAGTGGGACAATAGACTATGGTGAATTCATTGCTGCTACAGTCCACTTAAATAAGCTGGAGAGAGAGGAAAACCTGGTGTCCGCTTTCTCCTATTTTGACAAAGATGGAAGTGGTTACATAACCATTGACGAGATACAACAGGCTTGTAAGGATTTTGGTTTGGATGATGTCCATATCGATGAAATTGTCAAGGAAATTGATCAAGACGATGATGGACAGATAGATTATGGGGAATTTGCTGCCATGATGAGAAAGGGCAATGGAGGAATTGGCAGGCGAACCATGAGGAGCACGCTCAATTTCAGAGATGCTTTTGGAATTATAGACCATGGATCCGATTAA 1494 0.4799 MSNSTTGTTAALPPKPTWVLPYRTENLREVYTLSRKLGQGQFGTTFLCTHNATGRTFACKSIPKRKLLCKEDYDDVWREIQIMHHLSEHPNVVRIHGTYEDAASVHLVMELCEGGELFDRIVQKGHYSERQAAKLIKTIVEVVEACHSLGVMHRDLKPENFLFDTVEEGAKLKTTDFGLSVFYKPGETFCDVVGSPYYVAPEVLRKHYGPEADVWSAGVILYILLSGVPPFWAETEQGIFRQILLGRIDFQSEPWPSISDSAKDLIRKMLDRNPKTRVTAHQVLCHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFRMIDADNSGTITFDELKEGLKRVGSELMESEIKDLMDAADIDNSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITIDEIQQACKDFGLDDVHIDEIVKEIDQDDDGQIDYGEFAAMMRKGNGGIGRRTMRSTLNFRDAFGIIDHGSD* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1362 497 Gene3D - 402 497 - -
Gso6g1362 497 SUPERFAMILY Protein kinase-like (PK-like) 9 312 IPR011009 -
Gso6g1362 497 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 480 - -
Gso6g1362 497 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Gso6g1362 497 SMART efh_1 336 364 IPR002048 GO:0005509
Gso6g1362 497 SMART efh_1 442 470 IPR002048 GO:0005509
Gso6g1362 497 SMART efh_1 372 400 IPR002048 GO:0005509
Gso6g1362 497 SMART efh_1 408 436 IPR002048 GO:0005509
Gso6g1362 497 ProSitePatterns EF-hand calcium-binding domain. 345 357 IPR018247 -
Gso6g1362 497 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Gso6g1362 497 Pfam Protein kinase domain 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1362 497 CDD STKc_CAMK 30 288 - -
Gso6g1362 497 SMART serkin_6 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1362 497 ProSiteProfiles EF-hand calcium-binding domain profile. 332 367 IPR002048 GO:0005509
Gso6g1362 497 Gene3D Phosphorylase Kinase; domain 1 33 117 - -
Gso6g1362 497 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Gso6g1362 497 ProSiteProfiles Protein kinase domain profile. 31 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1362 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Gso6g1362 497 CDD EFh 337 396 IPR002048 GO:0005509
Gso6g1362 497 ProSiteProfiles EF-hand calcium-binding domain profile. 442 473 IPR002048 GO:0005509
Gso6g1362 497 SUPERFAMILY EF-hand 328 469 IPR011992 -
Gso6g1362 497 Gene3D Transferase(Phosphotransferase) domain 1 118 329 - -
Gso6g1362 497 Gene3D - 330 401 - -
Gso6g1362 497 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Gso6g1362 497 PANTHER CDPK-RELATED KINASE 5 480 - -
Gso6g1362 497 ProSitePatterns EF-hand calcium-binding domain. 451 463 IPR018247 -
Gso6g1362 497 Pfam EF-hand domain pair 337 397 IPR002048 GO:0005509
Gso6g1362 497 Pfam EF-hand domain pair 407 468 IPR002048 GO:0005509
Gso6g1362 497 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1362 Gso-Chr6 13400059 13404765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1362 13 496 EF-hand Containing Proteins AT4G09570 77.049 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso6g1362 Pkinase 6.1e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1362 K13412 - gmx:100790443 1000.35