Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1359 ATGTCGAGTTTCCACGTCGGCGGCAAGGTCGTGGACCGAGTCGATTTGCTGAGGAAGAAGCAATGGCCATGGCGCCTCGACGTTTGGCCCTTCGCTATCCTCTATGGCGCGTGGCTTTCCGCGATTCTTCCCAGCCTCGACTTCGTCGACGCCGCCATTGTCTTCGGCGCGCTCGTCTCGCTTCACATCCTCGTTTTTCTCTTCACCGGTTGGTCCGTTGATTTCAAATGCTTTGCCCATTATAGCAAGGTTAAGAATATTGATCAGGCAGATTCGTGCAAGATTACTCCGGCGAAGTTCTCCGGTGCAAAAGAAGTTGTGCCGCTTCATTCACGGAAAAGTTCTGCAGGTTCTTCATCAGCGGTGGATTTGGAAGAGAACTACTTCGATTTTAGAAAGCAATGTTTTGTGTATTCAAAGGAGAAGGGGACTTTTTGCAAGCTTTCCTACCCTACCAAAGAAACATTTGGATATTATCTGAAGTGTAGTGGCCATGGCTCTGAAGCTAAAGTTCTCGCTGCTACTGAGAAATGGGGGCGGAATGTATTTGATTATCCTCAGCCAACATTTCAGAAATTGATGAAAGAGCACTGCATGGAGCCTTTTTTCGTATTTCAGGTTTTCTGTGTGGGTCTCTGGTGTTTGGATGAATATTGGTATTACAGTTTGTTCACTCTATTTATGCTGTTTATGTTTGAGTCAACCATGGCAAAAAGTCGGTTGAAAACTCTAACTGAGTTAAGACGTGTTAGAGTGGATAGTCAGATCCTAATGGTACATCGCTGTGGCAAGTGGGTAAAACTCTCTGGTACAGAGCTTTTGCCTGGGGATGTTGTCTCCATAGGTCGCTCTTCTGGTCAGAATGGGGAGGAGAAGTCTGTACCAGCAGACATGCTTCTATTGGCTGGAAGTGTGATTGTGAATGAAGCTATTCTGACAGGCGAGTCTACCCCTCAATGGAAGATTTCAATCGCGGGTAGGGGGATGGAGGAGACATTGTCAGCAAGGCAAGATAAAAACCATGTGTTATTTGGTGGAACAAAAATATTGCAGCACACTCCAGATAAGAGTTTTCCTCTAAAAACACCTGATGGTGGCTGCTTGGCTGTTATCTTGAGAACGGGGTTTGAAACAAGTCAAGGAAAGTTGATGCGAACAATCTTATTCTCTACAGAAAGGGTGACTGCTAATAGCTGGGAAAGTGGATTCTTCATTTTATTCCTGGTTGTATTTGCTCTTATTGCTGCTGGTTATGTGCTTGTTAAGGGGCTAGAAGATCCCACAAGGAGCAAGTATAAACTTATACTAAGTTGTTCACTTATTGTTACTTCTGTGATTCCTCCTGAGTTACCAATGGAATTATCAATAGCTGTTAATACTTCCCTGATTGCACTGGCACGGCGTGGCATTTTTTGCACAGAGCCTTTTCGAATACCATTTGCTGGAAAGGTTGATATATGCTGTTTTGACAAGACAGGGACACTTACTTCTGATGACATGGAATTTTCTGGAATTGTTGGGTTGAATGGAACTACAGATTTGGAATCTGATACGAGTAAAGTGCCTCTGCGAACTGTAGAAATCCTGGCTTCTTGCCATGCATTGGTATTTGTTGAGAATAAGCTGGTTGGTGATCCTCTTGAGAAGGCTGCACTTAAGGGAATTGACTGGAGTTATAAATCTGATGACAAGGCTGTTCCAAAAAAGGGAAATGGCCATCCTGTCCAAATTGTTCATCGGTACCATTTTGCATCTCACTTAAAACGAATGGCAGTTGTTGTTCGCATTCAGGAGGAATTTTTCGCCTTTGTGAAGGGTGCCCCAGAAGTTATACAAGATAGGCTCGTTGATATACCGCCATCATATGTTGAGACCTACAAAAAATACACACGTCAAGGGTCTCGTGTTCTTGCTCTGGCTTACAAGTCTCTTGCTGACATGACAGTCAGTGAAGCTAGAAGCTTGGATAGGGGTATAGTGGAGAGTGGACTTACTTTTGCGGGTTTTGTGGTATTTAATTGTCCCATAAGATCAGATTCAGCCACTGTTTTAGCTGAATTGAAAGAATCCTCGCACGACTTAGTGATGATTACTGGTGACCAAGCGTTGACAGCTTGCCATGTTGCTAGCCAAGTTCATATTATATCAAAACCTACATTAATCCTTGGCCCGGCACAAAATGGTGAGGGATATAATTGGATGTCCCCTGATGAGACTGAAAACATTCGCTACAGTGAGAAAGAGGTCGAGTCTTTATCAGAGACTCATGATCTCTGTATTGGAGGTGATTGCATTGAGATGTTGCAACAGACATCAGCTCATCTTCGGGTCATTCCCTATTTGAAGGTTTTTGCTAGAGTTGCCCCCGAGCAAAAAGAACTTATCATGACCACTTTCAAAATGGTGGGACGGTTAACTTTGATGTGTGGGGATGGTACCAATGATGTTGGAGCTTTGAAACAGGCCCATGTAGGAATTGCTCTTCTGAATGCATTGCCTCCAACTCAAAGTGGAAACTCCTCTTCAGATTCGTCTAAGGAAGAAGGTTCAAAATCTGGCAAGCAAAAGAAATCTAAACCTGCAGCGGACACATCTGGGAAGACTGCTGGTGAAGGCACTTCAAAAGCCAAAGTTGCTTCAAAATCAGATTCCGCTAGTCACTCATCTGGTAACCGTCATCAGGCAGCCGTTGAGATGCAACGGCAGAAGCTTAAAAAGATGATGGATGAGCTTAATGAGGAAGGAGATGGTCGTGCACCCATTGTCAAGCTTGGTGATGCCTCAATGGCATCTCCATTCACTGCTAAGCATGCATCTGTTGCTCCCACCACTGACATAATTCGTCAAGGTCGGAGTACCCTAGTGACAACCCTCCAGATGTTTAAAATTCTGGGTCTCAACTGTCTTGCTACTGCATATGTGTTGAGTGTTATGTATCTGGATGGTGTCAAGCTAGGTGACATACAAGCCACAATAAGTGGTATCTTCACTGCTGCATTTTTCCTCTTTATCTCACATGCACGCCCTCTTCCCACTCTTTCTGCTGAACGTCCTCACCCCAACATCTTCTGTGCTTATGTTTTCCTTTCCCTCTTGGGACAATTTTCTATTCACCTGCTTTTCCTGATCTCATCTGTGAAAGAAGCTGAAAAACACATGCCAGATGAATGCATTGAACCTGATGCAGATTTTCATCCCAACCTGGTGAATACTGTTTCCTATATGGTGAGCATGATGCTTCAGGTGGCCACATTTGCTGTGAACTATATGGGTCATCCCTTCAACCAGAGTATTTCTGAAAACAGGCCGTTCCGGTATGCACTTGTTGCTGCTGTTGTTTTCTTTACTGTGATCACATCAGATCTATTCAGGGACTTGAATGACTGGTTGAAGTTAGTGCCATTGCCTGTGGGATTAAGGGATAAACTATTACTTTGGGCGTTTCTAATGTTTTTGGTTTGCTATTCGTGGGAGAGACTGTTGAGGTGGGCCTTCCCTGGTAAGATCCCAGCTTGGAAGAAGCGACAACGGCTTGCTGTATCTAATTTAGAAAAGAAACAGGTCTAA 3567 0.4413 MSSFHVGGKVVDRVDLLRKKQWPWRLDVWPFAILYGAWLSAILPSLDFVDAAIVFGALVSLHILVFLFTGWSVDFKCFAHYSKVKNIDQADSCKITPAKFSGAKEVVPLHSRKSSAGSSSAVDLEENYFDFRKQCFVYSKEKGTFCKLSYPTKETFGYYLKCSGHGSEAKVLAATEKWGRNVFDYPQPTFQKLMKEHCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLTELRRVRVDSQILMVHRCGKWVKLSGTELLPGDVVSIGRSSGQNGEEKSVPADMLLLAGSVIVNEAILTGESTPQWKISIAGRGMEETLSARQDKNHVLFGGTKILQHTPDKSFPLKTPDGGCLAVILRTGFETSQGKLMRTILFSTERVTANSWESGFFILFLVVFALIAAGYVLVKGLEDPTRSKYKLILSCSLIVTSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFSGIVGLNGTTDLESDTSKVPLRTVEILASCHALVFVENKLVGDPLEKAALKGIDWSYKSDDKAVPKKGNGHPVQIVHRYHFASHLKRMAVVVRIQEEFFAFVKGAPEVIQDRLVDIPPSYVETYKKYTRQGSRVLALAYKSLADMTVSEARSLDRGIVESGLTFAGFVVFNCPIRSDSATVLAELKESSHDLVMITGDQALTACHVASQVHIISKPTLILGPAQNGEGYNWMSPDETENIRYSEKEVESLSETHDLCIGGDCIEMLQQTSAHLRVIPYLKVFARVAPEQKELIMTTFKMVGRLTLMCGDGTNDVGALKQAHVGIALLNALPPTQSGNSSSDSSKEEGSKSGKQKKSKPAADTSGKTAGEGTSKAKVASKSDSASHSSGNRHQAAVEMQRQKLKKMMDELNEEGDGRAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGIFTAAFFLFISHARPLPTLSAERPHPNIFCAYVFLSLLGQFSIHLLFLISSVKEAEKHMPDECIEPDADFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSISENRPFRYALVAAVVFFTVITSDLFRDLNDWLKLVPLPVGLRDKLLLWAFLMFLVCYSWERLLRWAFPGKIPAWKKRQRLAVSNLEKKQV* 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1359 1188 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Gso6g1359 1188 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Gso6g1359 1188 PRINTS P-type cation-transporting ATPase superfamily signature 690 700 - -
Gso6g1359 1188 PRINTS P-type cation-transporting ATPase superfamily signature 809 828 - -
Gso6g1359 1188 Coils Coil 894 914 - -
Gso6g1359 1188 Pfam E1-E2 ATPase 258 468 - -
Gso6g1359 1188 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 678 IPR023299 GO:0000166
Gso6g1359 1188 SUPERFAMILY Calcium ATPase, transmembrane domain M 167 1166 IPR023298 -
Gso6g1359 1188 Gene3D - 483 668 IPR023299 GO:0000166
Gso6g1359 1188 Gene3D - 669 844 IPR023214 -
Gso6g1359 1188 SFLD Haloacid Dehalogenase 469 952 - -
Gso6g1359 1188 ProSitePatterns Hypothetical cof family signature 2. 809 831 - -
Gso6g1359 1188 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 403 509 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso6g1359 1188 Pfam haloacid dehalogenase-like hydrolase 485 713 - -
Gso6g1359 1188 MobiDBLite consensus disorder prediction 832 846 - -
Gso6g1359 1188 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 1180 - -
Gso6g1359 1188 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Gso6g1359 1188 MobiDBLite consensus disorder prediction 847 861 - -
Gso6g1359 1188 SUPERFAMILY Calcium ATPase, transduction domain A 255 387 IPR008250 -
Gso6g1359 1188 SUPERFAMILY HAD-like 483 835 IPR036412 -
Gso6g1359 1188 PANTHER CATION-TRANSPORTING ATPASE 1 1180 - -
Gso6g1359 1188 MobiDBLite consensus disorder prediction 867 896 - -
Gso6g1359 1188 CDD P-type_ATPase_cation 170 1104 - -
Gso6g1359 1188 MobiDBLite consensus disorder prediction 832 899 - -
Gso6g1359 1188 SFLD p-type atpase 469 952 IPR044492 -
Gso6g1359 1188 Gene3D - 226 388 - -
Gso6g1359 1188 TIGRFAM P-ATPase-V: P-type ATPase of unknown pump specificity (type V) 45 1146 IPR006544 GO:0006812|GO:0016021|GO:0019829|GO:0140358
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1359 Gso-Chr6 13353078 13368341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1359 1 1187 Primary Pumps ATPases AT5G23630 77.395 0.0 1914
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1359 K14950 - gmx:100789385 2316.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1729 4 47319122 47333800 Gso6g1359 6 13353078 13368341 GST