Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1357 ATGGGAAGATCCCCTTGTTGCGAGAAAGAACACACCAACAAAGGAGCTTGGACCAAAGAAGAAGACGAACGCCTCATCAACTACATCAAGCTCCATGGTGAAGGCTGTTGGAGATCCCTCCCCAAAGCTGCTGGCTTGCTCAGATGTGGCAAGAGTTGCAGACTCAGATGGATAAATTACCTCAGACCTGATCTCAAGAGAGGCAACTTCACTGAAGAGGAAGATGAACTCATCATAAACCTCCATAGCTTACTTGGAAACAAATGGTCTTTGATAGCTGCAAGGTTACCTGGAAGAACCGATAACGAAATAAAAAACTATTGGAACACTCACATCAAGAGAAAACTCTACAGCCGCGGAATCGACCCTCAAACTCATCGTCCACTCAACGCTGCCTCCGCCACTCCGGCAACCACCGTCACAGCCACCGCAGTTCCATCTTCTAACAGCAAGAAGAAGATAAAGAACAATAACAACAACAACAACGGTTTTCAGTTGGTGAATAATAGTGCTTATGCCAACACAAAGATTGGGACCGACATGATTGCTGCTGAAGATTCTAACAGCAGCAGTGGCGTTACAACAGAAGAATCCTTCCCTCATCATCAACTCAACTTGGACCTTTCCATAGGTCTTCCTTCTCAACCCCAAGTTTCTTCTTCGTTGAACCCAGAAAAGTTGAAACCAGAACCGCAAGAGCATGATGATCAGAAGCCACAGGTTTTGTACCAGTTGTATGGGAAGAACATCACTGGCCAACAAGGTGTGTGCCTATGTTACAATCTAGGGCTTCAAAGTAACCAAGCTTGTTATTGCAAAACCATGGGTACTTCTACTACTACGGTTACTACCACAACTGCGACCGATAGGAATCTATATAGATTTTACAGACCCATGAACATTTAG 906 0.4481 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNAASATPATTVTATAVPSSNSKKKIKNNNNNNNGFQLVNNSAYANTKIGTDMIAAEDSNSSSGVTTEESFPHHQLNLDLSIGLPSQPQVSSSLNPEKLKPEPQEHDDQKPQVLYQLYGKNITGQQGVCLCYNLGLQSNQACYCKTMGTSTTTVTTTTATDRNLYRFYRPMNI* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1357 301 MobiDBLite consensus disorder prediction 128 166 - -
Gso6g1357 301 MobiDBLite consensus disorder prediction 211 226 - -
Gso6g1357 301 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Gso6g1357 301 CDD SANT 69 112 IPR001005 -
Gso6g1357 301 Gene3D - 14 66 - -
Gso6g1357 301 SMART sant 66 114 IPR001005 -
Gso6g1357 301 SMART sant 13 63 IPR001005 -
Gso6g1357 301 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso6g1357 301 CDD SANT 16 61 IPR001005 -
Gso6g1357 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso6g1357 301 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso6g1357 301 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 244 - -
Gso6g1357 301 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso6g1357 301 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso6g1357 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso6g1357 301 MobiDBLite consensus disorder prediction 211 237 - -
Gso6g1357 301 Gene3D - 69 137 - -
Gso6g1357 301 MobiDBLite consensus disorder prediction 127 166 - -
Gso6g1357 301 PANTHER TRANSCRIPTION FACTOR MYB7 1 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1357 Gso-Chr6 13320907 13322492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1357 1 213 MYB Transcription Factor Family AT4G38620 64.319 1.52e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso6g1357 Myb_DNA-binding 4.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1357 K09422 - gmx:778033 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1731 4 47374925 47376610 Gso6g1357 6 13320907 13322492 GST
Gso8g0046 8 432192 433899 Gso6g1357 6 13320907 13322492 PCT
Gso6g1357 6 13320907 13322492 Gso8g0046 8 432192 433899 PCT