Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1353 ATGGATAAGTACGAGACCGTTAAGGATTTGGGAGCTGGCAATTTTGGGGTAGCTAGGCTTATGAGGAACAAGGTCACCAAGGAGCTTGTAGCCATGAAATACATCGAGCGTGGTCCCAAGATTGATGAGAACGTGGCAAGAGAGATTATGAACCACAGGTCCCTTCGGCATCCCAATATAATTCGTTACAAGGAGGTGGTTTTGACTCCCACACATTTAGCAATAGTGATGGAGTATGCAGCAGGGGGAGAGCTCTTTGAGAGGATATGCAGTGCTGGCAGGTTCAGTGAAGATGAGGCTAGATATTTCTTTCAGCAGCTGATCTCCGGTGTCCATTTCTGTCATACCATGCAAATATGCCACAGAGATTTGAAGCTAGAAAATACCCTTCTAGATGGAAGTCCTGCTCCTCGGTTGAAAATTTGTGACTTCGGTTATTCCAAGTCATCTTTGCTGCATTCGCGACCGAAATCAACTGTTGGAACACCAGCTTATATAGCACCGGAAGTTCTTTCTAGGCGAGAGTATGATGGAAAGTTGGCTGATGTATGGTCATGTGCGGTGACTCTTTATGTCATGCTGGTTGGAGCATATCCCTTTGAGGACCAGGATGATCCTAGGAATTTTAGGAAAACAATTCAGCGTATAATGGCTGTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGATTGTAGACACCTCCTCTCTCGTATATTTGTTGCAAATCCGTTGAGGAGAATTACTATTAAGGAAATTAAGAATCACCCATGGTTTTTGAGGAATCTTCCAAGGGAGCTAACTGAATCAGCTCAAGCTATCTATTACCAGAGAGACAGCCCAAACTTTCACCTTCAAAGTGTGGACGAGATAATGAAAATTGTGGGAGAGGCAAGAAATCCACCTCCAGTATCTAGAGCTGTCAAAGGTTTTGGCTGGGAAGGTGAAGAAGATTTGGATGAAGAAGTGGAGGAAGAAGAGGATGAAGAAGATGAGTATGATAAGAGGGTCAAAGAGGTTCATGCAAGTGGCGAATTTCAAATTAGTTAA 1053 0.4321 MDKYETVKDLGAGNFGVARLMRNKVTKELVAMKYIERGPKIDENVAREIMNHRSLRHPNIIRYKEVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVHFCHTMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCAVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCRHLLSRIFVANPLRRITIKEIKNHPWFLRNLPRELTESAQAIYYQRDSPNFHLQSVDEIMKIVGEARNPPPVSRAVKGFGWEGEEDLDEEVEEEEDEEDEYDKRVKEVHASGEFQIS* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1353 350 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2H 2 343 - -
Gso6g1353 350 PANTHER SERINE/THREONINE KINASE 2 343 - -
Gso6g1353 350 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Gso6g1353 350 MobiDBLite consensus disorder prediction 316 334 - -
Gso6g1353 350 Coils Coil 317 344 - -
Gso6g1353 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Gso6g1353 350 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gso6g1353 350 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Gso6g1353 350 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1353 350 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1353 350 SUPERFAMILY Protein kinase-like (PK-like) 2 294 IPR011009 -
Gso6g1353 350 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1353 350 MobiDBLite consensus disorder prediction 307 350 - -
Gso6g1353 350 CDD STKc_SnRK2 3 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1353 Gso-Chr6 13283047 13286632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1353 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 41.852 1.24e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Gso6g1353 Pkinase 5.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1353 K14498 - gmx:100786190 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1733 4 47409563 47413155 Gso6g1353 6 13283047 13286632 GST
Gso5g1681 5 40090936 40094991 Gso6g1353 6 13283047 13286632 PCT
Gso8g0043 8 403224 407292 Gso6g1353 6 13283047 13286632 PCT
Gso6g1353 6 13283047 13286632 Gso5g1681 5 40090936 40094991 PCT
Gso6g1353 6 13283047 13286632 Gso8g0043 8 403224 407292 PCT