Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1348 ATGCCGCTTTTGAAGAGAAAGCCTTTTGTGTTGCCTGAGCCACCTGATGATTTGGAGCCGCACGAGAATGTTTATCAAATTCGATTTACAAAAGAAATATTTCAAGATTACAATGATTATTTGAATCGTCTAAATCAGTATCGCCAGAGGGTTTGGACATGCAAAATTACTGGAAAATCTGGCTTGACTTATGAAGAGGCTCTGGTGTCAGAGAAGCATGCTGCTGAGAAAGTTCAACAGATTCCGGAAGAATTAGTGGCACCTGCTCTAAGGATTATCCACTACAGCATGCTCCCTTTGAAGGATCTTGCTGATTCTATTGCTGAAAAGTTGCAGGAACAGTTGTTTGTGGGCGCTCAATTGTATGGAAAAAAGAATGACAGAGTACGTCCATGTAAAGTATTGAAAGTGATGCAGGAAGATGCTGAAAATGTCCGCTATGTGGTAGCTTGGCTTGATGAAAACAATAATATTATTGAAAGAGAAGAAGTCAGCTCTCAAGATTTGGTACAGAAGAAGCCATGTTTTAGTAGAAATATTTTGAAGTCTTTTATTCGCAAATCTACATATCGAAATGCTCCTTGGGTTTTACATGATAAACTGGCAAAAAAACATGGAATCTCTACTGACATTCCAGAGGAGTTAAGGAGAAAGTTTTTCTTCAACAATGGGCTTGTGGTCTGCACCAAAAAAAGAAAAAATGAGGAAGAGTCAATCAAATATCCAATTGATGATCTATTAGTGAAGCCTAGTCCAGATGATCCTGTTTTCAGTAGTCGTCCTTCTCCATCAAGAGACTTTAATGTTCCAATTTATTGTGTAGGGGATCTCTTAATGGTTTGGGATTTTTTTATGTCTTTTGGTAAACTGTTGCGGTTGTCTCCTTACTCTCTCAAAGATTTTGAAAATGCAATTAGCCACAAGGAAAGCAATGTAGTTCTTCTAGTGGAATCTCATGCAGTACTCTTACGAGTGCTCATCAAAGGTGATTATGAATACTCTGCAGCTGTTCTGGAAAAAATACAGAAGAAGATTACATTGATTAGTTGGAAAGACTATCTATCTGATTTTCTAGAAATGATCAATATTCCCAAGTTGCGGCAACATGAAGCAACAATTAAACGGGGAGATTATGGTTATGTAGATGTCAATGCTAAATTAGAAATCTTTCGTGAACTAGTCAATAGAGCGCTTGGAACTGCTTTTGTCAGGGAAAAATTGGATGAGTTTATTGAACAGAGGACGGTACTGGGGGCCGCTAAAAGGGAAGAAGCAATTGAAGCTGCTGGGAAGAGAAGAAAAGTAAAGGAGCAGTTGAAAGCTGATTTTGAAAGGAACTGTGGCGAGAATGGGCATCATCTTGGCACGGTACTGGGGGCCGCTAAAAGAGAAGAAGCAATTGAAGCTGCTGGGAAGAGAAGAAAAGTAAAGGAGCAGTTGAAAGCTGATTTTGAAAGGAACTGTGGCGAGAATGGGCATCATCTTGGCCATGATGCAAGTGTGTCAACAAATAATAATCACAGAATACAGAATGGTGTCGCTGGAAAGAATAGAAACGGAGAGATAGAATCATCTAGGCAAAGAGATGCATTGGATAGTGGGATCAAGCATTCAAACATTGATTCAAAAATAAAGGCTAAAAAGTTCAATTTGGAGCTGAATAGAACAGCAGAAATTGTGGAAGTATCCAGAAAGGAATCAAAGAAACAACCAGGGGGTGATAAGGATCAATCAGAGAAAAGTGCAGAACAGAGGAGTGAATATTTTGATCGGGAGATGGAGAAATGGCGAATTCGTACAAGTCCCTTGGGTAAGGACAGATATTATAATAGGTATTGGTGGTTTCACCGTGATGGGAGGATATTTGTTGAAAGTTCTGACTCCAAGGAGTGGGGATTCTACAGTAGCAAAGAAGAGCTTGATGCATTGATGAGTTCACTGAATTGCAAAGGTGAAAGGGAAAGGGCACTGCATAAACAACTGGAAATATATTATAATAGAATATGCTCAGAACTGCAGAAAAGTTCAAAGGATTTGGTGCATAAGGTTGCCCAGGATGACTCTATGGTCCGAAGGTCTACTCGTGTTCGGGCTCCACCTAGGGAAAATCCTTCCAAAGCTTTCCTCAAATATGCCAATGTGTGGAAAGAAGAGTAA 2157 0.3959 MPLLKRKPFVLPEPPDDLEPHENVYQIRFTKEIFQDYNDYLNRLNQYRQRVWTCKITGKSGLTYEEALVSEKHAAEKVQQIPEELVAPALRIIHYSMLPLKDLADSIAEKLQEQLFVGAQLYGKKNDRVRPCKVLKVMQEDAENVRYVVAWLDENNNIIEREEVSSQDLVQKKPCFSRNILKSFIRKSTYRNAPWVLHDKLAKKHGISTDIPEELRRKFFFNNGLVVCTKKRKNEEESIKYPIDDLLVKPSPDDPVFSSRPSPSRDFNVPIYCVGDLLMVWDFFMSFGKLLRLSPYSLKDFENAISHKESNVVLLVESHAVLLRVLIKGDYEYSAAVLEKIQKKITLISWKDYLSDFLEMINIPKLRQHEATIKRGDYGYVDVNAKLEIFRELVNRALGTAFVREKLDEFIEQRTVLGAAKREEAIEAAGKRRKVKEQLKADFERNCGENGHHLGTVLGAAKREEAIEAAGKRRKVKEQLKADFERNCGENGHHLGHDASVSTNNNHRIQNGVAGKNRNGEIESSRQRDALDSGIKHSNIDSKIKAKKFNLELNRTAEIVEVSRKESKKQPGGDKDQSEKSAEQRSEYFDREMEKWRIRTSPLGKDRYYNRYWWFHRDGRIFVESSDSKEWGFYSSKEELDALMSSLNCKGERERALHKQLEIYYNRICSELQKSSKDLVHKVAQDDSMVRRSTRVRAPPRENPSKAFLKYANVWKEE* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1348 718 MobiDBLite consensus disorder prediction 562 586 - -
Gso6g1348 718 Pfam DDT domain 273 328 IPR018501 -
Gso6g1348 718 ProSiteProfiles WAC domain profile. 22 128 IPR013136 -
Gso6g1348 718 MobiDBLite consensus disorder prediction 497 520 - -
Gso6g1348 718 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 23 120 IPR013136 -
Gso6g1348 718 MobiDBLite consensus disorder prediction 488 534 - -
Gso6g1348 718 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 716 - -
Gso6g1348 718 ProSiteProfiles DDT domain profile. 271 332 IPR018501 -
Gso6g1348 718 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 598 662 IPR028941 -
Gso6g1348 718 SMART testlast3 271 332 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1348 Gso-Chr6 13245477 13251266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1348 539 661 Homeobox Transcription Factor Family AT5G44180 30.534 8.86e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gso6g1348 WAC_Acf1_DNA_bd 5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1348 - - gmx:100784607 1431.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1677 5 40058225 40065073 Gso6g1348 6 13245477 13251266 PCT
Gso8g0039 8 371810 377742 Gso6g1348 6 13245477 13251266 PCT
Gso6g1348 6 13245477 13251266 Gso5g1677 5 40058225 40065073 PCT
Gso6g1348 6 13245477 13251266 Gso8g0039 8 371810 377742 PCT