Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1345 ATGGCCGCAGAAATTTGTGGCGGGTCTCTATTCTTATCCGTTAAAACTCAACTGCAACAGCGAAACCAGCAAAATGTGTTCTTCCATGCTCAACGTAGCAGAACGCGAAGAAGCACTACCAGATTCCACTCATCCAAATGCTGCTTTAGTTCTTCCGCCTTTCCAAATGCGTCCCCGTTTCGCCGCGGCGCAGTGTGCCGGGTCGCCAGCACCGACTTCGAATCCTCCGCCAAAGCAGGCGAGGATCGTCTCTCTAAGGTGCCGGTGCGTAATATAAGGAACTTCTGCATCATTGCGCATATTGACCACGGGAAATCCACGTTGGCGGATAAGTTGCTTCAGGTTACCGGCACGGTGCAGCAGCGAGAAATGAAGGATCAGTTTCTCGATAACATGGATTTGGAGAGAGAAAGAGGCATCACTATTAAGCTCCAGGCAGCCAGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTAATAGACACTCCAGGGCATGTTGACTTCTCGTATGAGGTTTCTCGGTCACTCGCTGCATGTGAGGGTGCTCTTCTAGTAGTAGACGCTTCTCAGGGCGTTGAAGCACAAACACTAGCTAATGTTTATTTGGCTTTGGAGAACAACCTAGAAATTATCCCTGTTTTGAACAAAATAGATCTCCCAGGTGCAGAACCAGATCGAGTTATCAAGGAGATTGAAGAGATTGTAGGTCTAGATTGTAGCAATGCGATTCTCTGCTCTGCAAAGGAAGGAATAGGTATAATTGAAATTCTCAATGCAATTGTTGCAAGAATTCCCCCACCTGAAGATACATCTAAAAGACCATTGAGGGCTTTAATATTTGACAGCTACTACGATCCATATAGAGGTGTTATTGTATACTTTCGAGTTGTAGATGGGACTATAAAGAAAGGTGACAGAGTTTATTTTATGGCTAGTGGGAAGGATTATTTTGCTGATGAAATTGGAGTTTTATCTCCCAGTCAACTACAAGTTGAAGAATTGTATGCTGGTGAGGTGGGCTATCTATCTGCATCAATAAGAACAGTAGCTGATGCTAGAGTGGGTGACACTATTACTCACTATGGCAGAAAGGCTGACAATTCTCTCCCTGGATATGAGGAAGCCACTCCTATGGTGTTCTGTGGGTTGTTTCCTGTTGATGCTGACCAATTCCCTGATCTGCGTGATGCACTTGAAAAGCTACAACTCAATGATGCTGCACTTAAGTTTGAACCTGAGACATCAAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGGAGAGGCTTGAGAGAGAATACAATTTGAGCCTAATAACAACTGCTCCAAGTGTTGTGTACAGAGTACACTGTGTAAATGGTGATACTGTTGAATGCTCAAATCCATCTTTACTTCCTGAGCCTGGAAAAAGGAAATCAATTGAGGAGCCATTTGTTAAGATTGAGATGCTTACACCAAAGGACTACATTGGTCCACTTATGGAACTGGCACAAGAAAGAAGAGGGCAGTTCAAAGAAATGAAATTTATTGCTGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAGATGGTTGGTGATTTCTTTGACCAGTTGAAGTCAAGAAGTAAGGGTTATGCTAGTATGGAGTATACCTTTGTCGGGTACATTGAAAGTAATTTAATTAAACTTGACATACGGATAAATGGTGACTGTGTGGAGCCATTGGCTACAATTGTGCACAATGATAAGGCATATTCGGTGGGAAGGGCTTTGACTCTAAAGTTGAAGGAGCTAATACCACGACAAATGTTTAAAGTACCAATTCAAGCGTGCATAGGATCAAAAGTGATTGCTAGTGAAGCGATATCTGCAATAAGGAAGGATGTACTAGCCAAATGCTACGGTGGGGATATTTCAAGAAAAAAGAAATTGCTTAAGAAACAGGCTGAAGGAAAGAAAAGGATGAAGTCTATTGGTAAAGTTGATGTGCCCCAAGAAGCTTTCATGGCAGTTTTGAAACTTGAAAAGGAGGTAATATGA 2064 0.4254 MAAEICGGSLFLSVKTQLQQRNQQNVFFHAQRSRTRRSTTRFHSSKCCFSSSAFPNASPFRRGAVCRVASTDFESSAKAGEDRLSKVPVRNIRNFCIIAHIDHGKSTLADKLLQVTGTVQQREMKDQFLDNMDLERERGITIKLQAARMRYVFENEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPDRVIKEIEEIVGLDCSNAILCSAKEGIGIIEILNAIVARIPPPEDTSKRPLRALIFDSYYDPYRGVIVYFRVVDGTIKKGDRVYFMASGKDYFADEIGVLSPSQLQVEELYAGEVGYLSASIRTVADARVGDTITHYGRKADNSLPGYEEATPMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVHCVNGDTVECSNPSLLPEPGKRKSIEEPFVKIEMLTPKDYIGPLMELAQERRGQFKEMKFIAENRASITYELPLAEMVGDFFDQLKSRSKGYASMEYTFVGYIESNLIKLDIRINGDCVEPLATIVHNDKAYSVGRALTLKLKELIPRQMFKVPIQACIGSKVIASEAISAIRKDVLAKCYGGDISRKKKLLKKQAEGKKRMKSIGKVDVPQEAFMAVLKLEKEVI* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1345 687 Gene3D Translation factors 273 372 - -
Gso6g1345 687 Gene3D - 89 272 IPR027417 -
Gso6g1345 687 CDD LepA 93 270 - -
Gso6g1345 687 SUPERFAMILY EF-G C-terminal domain-like 379 457 IPR035647 -
Gso6g1345 687 CDD EF4_II 278 363 - -
Gso6g1345 687 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 90 271 IPR000795 GO:0003924|GO:0005525
Gso6g1345 687 PRINTS GTP-binding elongation factor signature 94 107 IPR000795 GO:0003924|GO:0005525
Gso6g1345 687 PRINTS GTP-binding elongation factor signature 137 145 IPR000795 GO:0003924|GO:0005525
Gso6g1345 687 PRINTS GTP-binding elongation factor signature 161 171 IPR000795 GO:0003924|GO:0005525
Gso6g1345 687 PRINTS GTP-binding elongation factor signature 177 188 IPR000795 GO:0003924|GO:0005525
Gso6g1345 687 PRINTS GTP-binding elongation factor signature 213 222 IPR000795 GO:0003924|GO:0005525
Gso6g1345 687 PANTHER TRANSLATION FACTOR GUF1-RELATED 79 681 IPR006297 GO:0005525
Gso6g1345 687 TIGRFAM small_GTP: small GTP-binding protein domain 93 262 IPR005225 GO:0005525
Gso6g1345 687 Pfam Elongation factor Tu domain 2 292 362 IPR004161 GO:0005525
Gso6g1345 687 Hamap Elongation factor 4 [lepA]. 87 685 IPR006297 GO:0005525
Gso6g1345 687 Gene3D - 455 565 - -
Gso6g1345 687 Pfam Elongation factor Tu GTP binding domain 91 268 IPR000795 GO:0003924|GO:0005525
Gso6g1345 687 Gene3D Elongation Factor G (Translational Gtpase), domain 3 373 454 - -
Gso6g1345 687 SUPERFAMILY Translation proteins 269 374 IPR009000 -
Gso6g1345 687 CDD EF4_III 380 455 - -
Gso6g1345 687 Gene3D - 567 641 IPR038363 -
Gso6g1345 687 TIGRFAM lepA: elongation factor 4 91 682 IPR006297 GO:0005525
Gso6g1345 687 Pfam GTP-binding protein LepA C-terminus 575 681 IPR013842 -
Gso6g1345 687 SUPERFAMILY EF-G C-terminal domain-like 486 580 IPR035647 -
Gso6g1345 687 SMART EFG_C_a 485 573 IPR000640 -
Gso6g1345 687 Hamap Translation factor GUF1 homolog, organellar chromatophore [lepA]. 84 684 IPR027518 -
Gso6g1345 687 Pfam Elongation factor G C-terminus 486 570 IPR000640 -
Gso6g1345 687 CDD lepA_C 488 567 IPR035654 -
Gso6g1345 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 295 IPR027417 -
Gso6g1345 687 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 130 145 IPR031157 -
Gso6g1345 687 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 79 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1345 Gso-Chr6 13207929 13217038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1345 90 333 Eukaryotic Initiation Factors Gene Family AT3G22980 33.463 2.18e-26 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1345 K21594 - gmx:100784073 1321.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1739 4 47478090 47488064 Gso6g1345 6 13207929 13217038 GST