Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1327 ATGAAGGGAGAATTAGAGTTGCCACCAGGGTTCAGATTTCACCCCACTGATGAAGAATTGGTGAATCACTACTTGTGTAGGAAGTGCGCGGGTCAACCAATCGCGGTTCCCATCATCAAAGAGGTCGATTTGTACAAGTTTGATCCATGGCAGCTTCCAGAAATTGGCTACTACGGCGAGAAAGAATGGTACTTCTTTTCTCCTCGGGATCGGAAATACCCGAACGGTTCACGGCCGAACCGTGCCGCCGGAAGCGGCTATTGGAAAGCCACCGGCGCCGATAAGGCGATCGGAAAACCGAAAGCGCTAGGGATCAAGAAAGCTCTGGTTTTTTACGCCGGAAAAGCCCCCAAAGGAGTGAAAACCAATTGGATCATGCACGAATATCGCCTCGCCAATGTTGACCGATCTGCCTCCAAGAAAAACAACAACAACTTGAGGCTTGATGATTGGGTGTTGTGTCGAATCTACAACAAGAAAGGGAAGATTGAGAAATACAACACGACCGCACCGAAGATGAATCTTGAAATGATTCATAGTTTTGAGCACGAGAACGAGACGAAGCCTGAGATTCATAAGCTTGGAAATGAGCAATTGTTGTACACGGAGACTTCAGATTCGGTGCCAAGGTTGCACACGGACTCGAGCAGCTCGGAGCACGTGGTTTCGCCCGATGTGAGGTGCGAGAGGGAAGTGCAGAGCGACCCCAAGTGGAATAACGATGATTATGATCTGGGCCTACAGCTAGAAAACGCGTTTGATTTTCAGTTTAATTACTTGGACGATAATAACCTTTCCGTCGACGATGACCCCTTTGGCACTGTTCAGTACCAAATGGGTCAGCTCTCGCCCTTGCAGGACATGTTCATGTACCTACAGAAGATGTGA 888 0.4854 MKGELELPPGFRFHPTDEELVNHYLCRKCAGQPIAVPIIKEVDLYKFDPWQLPEIGYYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKAIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNNNLRLDDWVLCRIYNKKGKIEKYNTTAPKMNLEMIHSFEHENETKPEIHKLGNEQLLYTETSDSVPRLHTDSSSSEHVVSPDVRCEREVQSDPKWNNDDYDLGLQLENAFDFQFNYLDDNNLSVDDDPFGTVQYQMGQLSPLQDMFMYLQKM* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1327 295 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Gso6g1327 295 Gene3D NAC domain 16 164 IPR036093 GO:0003677|GO:0006355
Gso6g1327 295 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 5 272 - -
Gso6g1327 295 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Gso6g1327 295 PANTHER NAC TRANSCRIPTION FACTOR 56 5 272 - -
Gso6g1327 295 ProSiteProfiles NAC domain profile. 7 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1327 Gso-Chr6 13010014 13011862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1327 1 294 NAC Transcription Factor Family AT1G01720 62.252 7.50e-123 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso6g1327 NAM 6.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1327 - - gmx:100779770 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2079 4 51225802 51227813 Gso6g1327 6 13010014 13011862 GST