Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1307 ATGATGTTAATCGGCGACGGTGCCGGTTGCCGGAAAGTCCTCGTCGGCGTTAAATTAGATCCTCGCAGCCGCGAATTGCTGACGTGGGCTCTCGTCAAGGTCGCCGAGCCCGGCGACCTCGTCATTGCGCTTCACGTCCTCGACTCCATCACTGAGGGAACGGCATCGCTGTTATCTCTCGTGAAGACGTTCGATTCCGTTCTCGGCGTTTATGAAGGCTTCTGCAACCTAAAACAGGTTGGTCTGAGGCTTAAAGTGTGTCGCGGAGGTTCGGTAAGGAAGGCGTTGGTGCAGGAGGCAAAGGCGTTTGGCGTTTCCACCGTGATTTTGGGAACTTCGAAATCTTATCATACTATTCGTTCTTCCGCGTGGGTTGCGAAATACTGCGCAAAGAAATTGCCGAAGTGTATCTCTGTTTTCTCCGTTGATAATGGCAAAATCGCGTTCCGGAGAGAAGCTAATGGAAATTGCAGTGATCGAGAGAAATTGTGTGAAGGGTCAAGTTTGTCGTCAAAATCGTTGGTGGTTTACACAAATAAGAATATGAAGAGTTGTGGAAGTTGTGCATTGCAAGAGGGTTCTGGAACTGAGTTTGAGCAAGGGTTGTGTGAGGATGTTGAGAAGGAGAATCCGCTTGCTTTGGTTCCGTTTAAGAAGCTTGAAGATGCTCCTTGTTTTTCGGTTGTGGTGGATAATTCGAAGCCTAAACCTGGTTGGTCACTGCTTCGCCATGTGTTTCATCACAAGAAGCATAACCATAAGTCTTCTTCTATGAAGAATACATTTGTTTTTCAACGGGCGTTGCGGCAGCCGAATTGTCATTCTTCTGCTGTGGTCCATCCAGATCATAAACAAATTAGTTTTAAGCAGATTGATGATTCCCCTCTTGATGGGGTGAGTGGTGCCATTGTGCCATTTGAATCTGCTACAACTACTCTCTTTACTCTTCCCTCCATTTGCAGTGGTTTGAGTAGCCTTCCTGAAGAATTGTTAGTATTACAAGAGAAGTACTCGTCCTTGTGCCGATTATATCGTTTGCAGGAACTTTTATCTGCAACCTCCAACTTTGCATCTGATAATTTGATTGGCAGAGGTGGCTGTAGTTATGTTTACAGAGGATGTCTTCCAGATGGCGAGGAATTGGCGGTGAAAATTTTGAAGCCGTCTGAAAACGTGATAAAGGAGTTTGTTCAGGAAATTGAGATCATTACAACTTTGCGCCACAAGAACATAATATCTATATCTGGCTTTTGTTTAGAGGGCAACCATTTGCTACTAGTGTATGATTTTTTATCAAGAGGAAGCCTGGAAGAAAACCTTCATGGCAACAAGGTGGACTGTAGTGCATTTGGTTGGCAAGAAAGGTACAAGGTGGCCGTGGGTGTAGCTGAGGCACTGGATTATCTGCATAATGGCTGTGCTCAGGCTGTGATCCATAGGGATGTGAAATCTTCTAATATCCTTCTTTCAGATGATTTTGAGCCTCAGCTTTCAGATTTTGGACTGGCTAGTTGGGGTTCATCTTCTTCCCATATTACTTGTACTGATGTGGCCGGAACTTTTGGATACCTCGCACCTGAGTACTTTATGCACGGTAGAGTGACTGATAAAATTGACGTATATGCTTTTGGTGTTGTACTCCTTGAGCTTCTCTCAAATAGGAAGCCCATTAACAATGAATGCCCAAAGGGCCAGGGGAGCCTTGTTATGTGGGCAATACCAATTTTGGAAGGTGGGAAGTTTTCCCAGTTGCTTGATCCAAGCCTAGGCAGTGAATATGACGATTGCCAGATCAGGAGAATGATTTTGGCCGCTACTCTCTGCATTAGACGGGTTCCTAGGTTGCGACCTCAAATCAGCCTTATATTGAAACTTCTGCACGGTGATGAAGAGGTGATAAGATGGGCAGAACAAGAAGTTATTGCGCCACAGGAACTCGATGGATGTGATGAGGAACCAGTTCCAACTAACATTCAGTCACACCTAAACCTTGCTTTACTGGACTTGGAGGATGATACGATTTCTATCAGTAGCACCGAGCAGAGTGTCTCTTTGGAGGACTATTTGCATGGAAGATGGAGTCGATCTTCAAGTTTTGACTAA 2103 0.4517 MMLIGDGAGCRKVLVGVKLDPRSRELLTWALVKVAEPGDLVIALHVLDSITEGTASLLSLVKTFDSVLGVYEGFCNLKQVGLRLKVCRGGSVRKALVQEAKAFGVSTVILGTSKSYHTIRSSAWVAKYCAKKLPKCISVFSVDNGKIAFRREANGNCSDREKLCEGSSLSSKSLVVYTNKNMKSCGSCALQEGSGTEFEQGLCEDVEKENPLALVPFKKLEDAPCFSVVVDNSKPKPGWSLLRHVFHHKKHNHKSSSMKNTFVFQRALRQPNCHSSAVVHPDHKQISFKQIDDSPLDGVSGAIVPFESATTTLFTLPSICSGLSSLPEELLVLQEKYSSLCRLYRLQELLSATSNFASDNLIGRGGCSYVYRGCLPDGEELAVKILKPSENVIKEFVQEIEIITTLRHKNIISISGFCLEGNHLLLVYDFLSRGSLEENLHGNKVDCSAFGWQERYKVAVGVAEALDYLHNGCAQAVIHRDVKSSNILLSDDFEPQLSDFGLASWGSSSSHITCTDVAGTFGYLAPEYFMHGRVTDKIDVYAFGVVLLELLSNRKPINNECPKGQGSLVMWAIPILEGGKFSQLLDPSLGSEYDDCQIRRMILAATLCIRRVPRLRPQISLILKLLHGDEEVIRWAEQEVIAPQELDGCDEEPVPTNIQSHLNLALLDLEDDTISISSTEQSVSLEDYLHGRWSRSSSFD* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1307 700 Pfam Protein kinase domain 358 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1307 700 Gene3D HUPs 3 135 IPR014729 -
Gso6g1307 700 Gene3D Phosphorylase Kinase; domain 1 327 430 - -
Gso6g1307 700 SUPERFAMILY Protein kinase-like (PK-like) 337 626 IPR011009 -
Gso6g1307 700 Gene3D Transferase(Phosphotransferase) domain 1 431 641 - -
Gso6g1307 700 ProSiteProfiles Protein kinase domain profile. 356 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1307 700 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 113 - -
Gso6g1307 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Gso6g1307 700 PANTHER OS01G0253100 PROTEIN 7 694 IPR045271 GO:0004714|GO:0006468
Gso6g1307 700 CDD USP_Like 12 113 - -
Gso6g1307 700 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 7 694 - -
Gso6g1307 700 Pfam Universal stress protein family 11 134 IPR006016 -
Gso6g1307 700 SMART serkin_6 356 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1307 Gso-Chr6 12779330 12783091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1307 343 622 Trihelix Transcription Factor Family AT1G68690 45.105 1.11e-73 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso6g1307 Pkinase 8.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1307 - - gmx:100817908 1393.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1771 4 47827034 47830577 Gso6g1307 6 12779330 12783091 GST
Gso14g1226 14 29099200 29103715 Gso6g1307 6 12779330 12783091 PCT
Gso13g0185 13 10723880 10728389 Gso6g1307 6 12779330 12783091 PCT
Gso6g1307 6 12779330 12783091 Gso14g1226 14 29099200 29103715 PCT
Gso6g1307 6 12779330 12783091 Gso13g0185 13 10723880 10728389 PCT