Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1298 ATGAAGAAACAAGGGTGTGAGGTTGAGGCAATTGGCATCAACTACAAGATCCGTACAAAGACAACAGAGAAACCTTTTAAAATCTTCACCAAACTTCCACAATTGAATAGGGAAGAAGATGTTCATGAAGCAGAAGATGAACAAAGGTCATGCCGTGGAGTGAGGCATGTCCTCAAAGATGTGAATTGCATGGCCAAGCCATGGGAAATTCTGGCAATTGTTGGGCCAAGTGGAGCTGGAAAAACATCCCTTCTTGAGATCCTTGCTGGTAAAGCTAGTCCTCAAAGTGGTTCTATCTTGGTGAATCAAGAACCTGTGGATAAAGCTGAGTTCAAAAAATTTTCAGGGTATGTTACACAAAAGGATACCTTGTTTCCCTTACTTACAGTTGAAGAAACCATTATGTTTAGTGCAAAGTTAAGGCTAAATCTTCCTCGGGAGCAATTATTCTCCAGGGTCAAGTCACTGATTCTAGAGCTTGGTCTTGGCCATGTTGCTAGGACTAGAATTGGAGATGAAAGTGTCCGCGGCATATCCGGTGGTGAGAGGCGCCGTGTTTCCATTGGTGTTGAAGTCATACATGATCCAAAAGTGCTGATCTTGGATGAACCAACTTCAGGGCTTGACAGTAATTCAGCTTTGCAAATAATTGAAATGCTTAAAGTCATGGCTGACTCTAGGGGAAGAACTATAATCCTCAGTATCCACCAACCCAGGTACAGAATAGTGAAGTTGTTCAACTCATTACTGTTATTGGCCAATGGCAATGTGTTGCACCATGGCACTGTGGATTTAATGGGTGTGAATCTAAGACTAATGGGTTTAGAGCTTCCTCTTCATGTTAATGTAGTTGAGTTTGCCATTGATTCTATTGAGACCATTCAGCAACAACAAAAATTTCAGCATGGTGAGAGTAGAAGTGGTAAGTTTACTTTGCAACAGCTCTTTCAACAATCCAAGGTAATTGACATAGAAATCATTAGTTCGGGAATGGATATCACCTGTGGTTTTGCTAATTCTGGATTGAGAGAAACTATGATTCTCACTCATAGGTTCTCCAAAAACATCCTTCGCACAAAGGAACTCTTTGCTTGCAGGACAATTCAAATGCTGGTTTCTGGACTTGTTTTAGGCTCAGTCTTTTGTAATCTCAAGGATGGTCTAGTAGGAGCAGAAGAAAGAGTGGGTCTATTTGCTTTCATATTAACGTTTTTGTTGTCAAGCACCACCGAAGCTCTACCGATTTTTCTGCAAGAAAGGGAGATTCTAATGAAGGAGACCTCTAGTGGAAGCTACAGAGTTTCATCCTATGCTATTGCCAATGGCCTAGTTTACTTGCCATTTCTACTCATACTAGCCATTTTGTTCACAATGCCTTTGTACTGGCTCATTGGTCTCAACAGAAATTTCACAGCATTTTTGTACTTTTTGATGCAAATTTGGCTGATTCTTAACACTGCAAATTCGGTTGTGGTATGTTTCAGTGCACTGGTGCCTAATTTCATTGTTGGAAATTCGATGATCGCTGGTGTCATTGGTTCGTTTCTCTTGTTCTCTGGCTACTTCATATCAAAACATGAAATTCCAAGTTACTGGATTTTCATGCATTACATATCTCCATTTAAGTATCCCTTTGAAGGGTTCCTAATAAATGAGTTCTCCAACTCAAATAAGTGCTTGGAGTACTTGTTTGGGACATGTGTGGTGAGAGGAGCGGATGTACTTAAAGAAGCAAAGCTTGGAGGAGAGACTAGTAGATGGAAGAATGTTGGGGTGATGGTGTGCTTTATCTTGGTTTACAGGTTCATTTCTTATGTAATTCTTAGGTACAGATGTTCGCAAGGAGTTATCCTAAAAGTATGA 1863 0.4047 MKKQGCEVEAIGINYKIRTKTTEKPFKIFTKLPQLNREEDVHEAEDEQRSCRGVRHVLKDVNCMAKPWEILAIVGPSGAGKTSLLEILAGKASPQSGSILVNQEPVDKAEFKKFSGYVTQKDTLFPLLTVEETIMFSAKLRLNLPREQLFSRVKSLILELGLGHVARTRIGDESVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSNSALQIIEMLKVMADSRGRTIILSIHQPRYRIVKLFNSLLLLANGNVLHHGTVDLMGVNLRLMGLELPLHVNVVEFAIDSIETIQQQQKFQHGESRSGKFTLQQLFQQSKVIDIEIISSGMDITCGFANSGLRETMILTHRFSKNILRTKELFACRTIQMLVSGLVLGSVFCNLKDGLVGAEERVGLFAFILTFLLSSTTEALPIFLQEREILMKETSSGSYRVSSYAIANGLVYLPFLLILAILFTMPLYWLIGLNRNFTAFLYFLMQIWLILNTANSVVVCFSALVPNFIVGNSMIAGVIGSFLLFSGYFISKHEIPSYWIFMHYISPFKYPFEGFLINEFSNSNKCLEYLFGTCVVRGADVLKEAKLGGETSRWKNVGVMVCFILVYRFISYVILRYRCSQGVILKV* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1298 620 Pfam ABC transporter 58 206 IPR003439 GO:0005524
Gso6g1298 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 264 IPR027417 -
Gso6g1298 620 Pfam ABC-2 type transporter 345 553 IPR013525 GO:0016020|GO:0140359
Gso6g1298 620 PANTHER ABC TRANSPORTER G FAMILY MEMBER 5 1 611 - -
Gso6g1298 620 CDD ABCG_EPDR 52 261 - -
Gso6g1298 620 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 36 279 IPR003439 GO:0005524
Gso6g1298 620 Pfam ABC-2 type transporter 236 302 IPR043926 GO:0140359
Gso6g1298 620 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 611 - -
Gso6g1298 620 Gene3D - 36 269 IPR027417 -
Gso6g1298 620 ProSitePatterns ABC transporters family signature. 178 192 IPR017871 GO:0005524
Gso6g1298 620 SMART AAA_5 67 258 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1298 Gso-Chr6 12672409 12674587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1298 56 298 Calmodulin-binding Proteins AT2G36910 24.016 2.14e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1298 K05681 - gmx:100811164 1216.83