Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1297 ATGGAAGATGAAAGCATCAACCTTCCTCCTGGGTTTTTGTTCTCTCCAACTGATGAAGAACTTGTTGTTCACTTTCTTTATTGTAAGGCGTTGTTAAGTGGAAATCAGTACTATTTCTTTACCAAAGTGAATGAAAACAGAACCACTGAAAATGGGTATTGGAAGGACACAGGTGTCACGAAACCTATATTGTCAACCTTTGATAAGGAAGTGGGAATGAAGAAGTACTTGGTATTCCACATTGGTGAAGCTCCACAGGGCACTGAAACCAGTTGGGTAATGCAAGAATATCATATATGTTCCTCTGAGTTTGACACTGCCTCATATCGAAGTGTTAGGAGAAGAAGAAAACATGATCAAAGTTGGAGCAAGTGCGTTTTGTGCAGAGTCTATGAGAAGATCAGGTCTCAACAAAGTGTAGACTGCTATAGGGATGATGATGATGATGGCAGTGGATCAGAGCTTTCGTGGCTAGACGAAGTTTATCTGTCGTTGGATGATGATCTGAAAGAGATTGGCATGCCTATTTAG 531 0.4068 MEDESINLPPGFLFSPTDEELVVHFLYCKALLSGNQYYFFTKVNENRTTENGYWKDTGVTKPILSTFDKEVGMKKYLVFHIGEAPQGTETSWVMQEYHICSSEFDTASYRSVRRRRKHDQSWSKCVLCRVYEKIRSQQSVDCYRDDDDDGSGSELSWLDEVYLSLDDDLKEIGMPI* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1297 176 Gene3D NAC domain 31 137 IPR036093 GO:0003677|GO:0006355
Gso6g1297 176 ProSiteProfiles NAC domain profile. 1 133 IPR003441 GO:0003677|GO:0006355
Gso6g1297 176 Pfam No apical meristem (NAM) protein 33 99 IPR003441 GO:0003677|GO:0006355
Gso6g1297 176 SUPERFAMILY NAC domain 5 132 IPR036093 GO:0003677|GO:0006355
Gso6g1297 176 PANTHER NAC TRANSCRIPTION FACTOR 56 26 173 - -
Gso6g1297 176 PANTHER NAC TRANSCRIPTION FACTOR 56 2 32 - -
Gso6g1297 176 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 2 32 - -
Gso6g1297 176 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 26 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1297 Gso-Chr6 12656866 12658113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1297 1 138 NAC Transcription Factor Family AT1G61110 35.754 2.83e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso6g1297 NAM 1.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1297 - - gmx:100815777 346.28