Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1290 ATGAATCTCTCTTATCTTACTCGCTTCCCCGAGCGTCTCGTTGCTCCTCTTTATGCCACACTTCCCACTACAGCTACTACTAGTGGAAATAGGCCTGAGAATTTTGCGATTGAAGGGCGTAATTTGAAATTCTCATTCACGACGAGGCAAACACAGGATGTACCGGTTCTTAAGGATTGTTCGATTCGCATTCCTTGCGGGCAGTTTTGGATGCTTCTTGGACCCAATGGGTGTGGAAAATCTACCCTCTTGAAGATTTTGGCTGGTCTCTTGACTCCAACTTCAGGAACAGTGTACGTGAATGGGCCTAAAAGTTTTGTTTTCCAAAATCCAGATCATCAGGTGGTAATGCCTACGGTAGATTCTGATGTTGCATTTGGTCTTGGTAAGATCAATTTGGCTCACGATGAAGTCAGATCTAGGGTGTCAAGAGCTTTGCATGCTGTAGGCCTGTCTGACTACATGAAGAGATCTGTCCAAACTCTGAGTGGTGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTTGCTGAAGCTTGTAAAGTTCTGTTGTTGGATGAGCTCACAACATTCTTAGATGAAGCTGACCAGGTTGGGGTCATCAAAGCTGTTAGGAACTCAGTGGATACCTCTGCAGAAGTTACAGCATTATGGGTCACCCATCGCTTGGAAGAACTGGAGTATGCAGATGGTGCCATCTACATGGAGGATGGGAAAGTAGTCATGCATGGAGATGCCGCTAGCATTAGGAGTTTCATTGAAGCCAGGCAATCTGCCTATATAACCCAGATTAATTCTTAA 801 0.4557 MNLSYLTRFPERLVAPLYATLPTTATTSGNRPENFAIEGRNLKFSFTTRQTQDVPVLKDCSIRIPCGQFWMLLGPNGCGKSTLLKILAGLLTPTSGTVYVNGPKSFVFQNPDHQVVMPTVDSDVAFGLGKINLAHDEVRSRVSRALHAVGLSDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDEADQVGVIKAVRNSVDTSAEVTALWVTHRLEELEYADGAIYMEDGKVVMHGDAASIRSFIEARQSAYITQINS* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1290 266 Pfam ABC transporter 57 189 IPR003439 GO:0005524
Gso6g1290 266 SMART AAA_5 66 239 IPR003593 -
Gso6g1290 266 ProSitePatterns ABC transporters family signature. 162 176 IPR017871 GO:0005524
Gso6g1290 266 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 37 262 IPR003439 GO:0005524
Gso6g1290 266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 255 IPR027417 -
Gso6g1290 266 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 26 265 - -
Gso6g1290 266 Gene3D - 33 265 IPR027417 -
Gso6g1290 266 CDD ABC_cobalt_CbiO_domain1 38 239 IPR015856 GO:0005524|GO:0016020|GO:0055085
Gso6g1290 266 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 26 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1290 Gso-Chr6 12601271 12604473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1290 37 244 Calmodulin-binding Proteins AT2G36910 29.646 1.32e-21 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1290 - - gmx:100813654 505.368