Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1287 ATGCCCACTTGGTGGGGTAAAAAGTCCAGCAAGAGCAAGGACCAACAACCGCAAGAAGACCACCACCACCCCCCTCATGGCGGAGGAGGAGGCGCCGCCACCAGTGTCCTTAACTTCAATTTCAACAAGCTCAACAAGCCCAGGCCCGACAGGCCCTCCAAGAGCTTCGACGACGTCGTCAGAAACTCCCCTCGCTGCAGCCGCGATTTCAGTTCCTCCGCCGCCGCCGCCGTCGACCAAGGCCTCCCCTTGCCTCGCCCCTCTGTCTCCTCCACGCAAAGCTTCGGCATCGAGCAAGGCCTTGTTTTCGGATCTGGCTCTGTTTCCGGCTCCAGCGTCAGCTCCAGCGGCTCCTACGATGATCACCCTACCTGTCACTCTCAGATTAATGCCTCCAGAGGGCAAGGTGACACGAAGTTCTATGCGAGGTCTAAAAGCCCGGGTCCTGGGTCAAGAGGGCCCACCAGCCCAACATCACCTCTTCATCCGAAGTTGCATGTTTTGAGTCTTGACTCCCCTACAGGCAGGCAAGAAGGTGAATGTCATCCATTGCCTCTTCCGCCAGGTTCTCCTACCAGTCCTTCTTCTTCTCTTCCCAGCACAAGAGCAAATGGAATGACGGAACACACTACCGGTAACCTTTCGAAGTGGAAGAAAGGAAAGCTTCTTGGTCGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAGTGATAGTGGACAATTGTGCGCAATAAAAGAAGTCAGGGTTGTCTGTGATGACCAATCATCAAAAGAGTGCCTCAAACAACTTAATCAGGAGATCCATTTGCTCAGTCAGCTTTCACATCCAAACATTGTTCAATACTATGGGAGTGATTTGGGAGAAGAAACACTTTCCGTTTATTTGGAATATGTCTCTGGTGGTTCTATTCATAAATTACTTCAGGAATATGGGGCCTTCAAGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTTCCTATCTTCATGGGAGAAATACAGTACATAGGGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCTAAACATATAAATTCTTCTTCCTCCATGCTTTCTTTCAAAGGGAGTCCATACTGGATGGCACCCGAGGTTGTAATGAATACAAATGGCTATAGTCTTCCTGTTGATATATGGAGTTTGGGATGCACAATTCTTGAAATGGCAACATCAAAGCCTCCTTGGAATCAGTATGAAGGGGTAGCTGCAATATTTAAAATTGGTAACAGCAGAGATATGCCTGAAATTCCGGATCACCTCTCAAGTGAGGCAAAGAATTTCATTCAGCTATGCTTACAAAGAGATCCATCAGCCCGCCCAACAGCCCAGAAGTTAATAGAGCATCCCTTTATTCGAGATCAGTCAGCAACAAAAGCTACAAATGTCAGAATAACCAGGGATGCTTTCCCCTACATGTTTGATGGAAGTCGGACGCCTCCGCCAGTTTTAGATCATTCCAATAGAACAAGTTTAACTTCATTCGATGGAGATTATGCAACAAAGCCAATTCCCGTAACTTCACGTACAGTAAGGAGCCCAAGAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCTTTGCGACAGTATGGGCCAGCACACAAGAGCTGTTTCCTTTCTCCTCCTCACCCAACTTACACTTTGATGGGGCAAAATACCCTCCCCTCATATCCAGTGAGATCAAATGCCACATTCACTCTTGACCCTTTTCATGAAACTGCTTTCTACAAAGCCCACACACCCGGTGGATCCCCAAGAAGACTCATTTGA 1851 0.4743 MPTWWGKKSSKSKDQQPQEDHHHPPHGGGGGAATSVLNFNFNKLNKPRPDRPSKSFDDVVRNSPRCSRDFSSSAAAAVDQGLPLPRPSVSSTQSFGIEQGLVFGSGSVSGSSVSSSGSYDDHPTCHSQINASRGQGDTKFYARSKSPGPGSRGPTSPTSPLHPKLHVLSLDSPTGRQEGECHPLPLPPGSPTSPSSSLPSTRANGMTEHTTGNLSKWKKGKLLGRGTFGHVYLGFNSDSGQLCAIKEVRVVCDDQSSKECLKQLNQEIHLLSQLSHPNIVQYYGSDLGEETLSVYLEYVSGGSIHKLLQEYGAFKEPVIQNYTRQIVSGLSYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSSSMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTILEMATSKPPWNQYEGVAAIFKIGNSRDMPEIPDHLSSEAKNFIQLCLQRDPSARPTAQKLIEHPFIRDQSATKATNVRITRDAFPYMFDGSRTPPPVLDHSNRTSLTSFDGDYATKPIPVTSRTVRSPRDNTRMITSLPVSPCSSPLRQYGPAHKSCFLSPPHPTYTLMGQNTLPSYPVRSNATFTLDPFHETAFYKAHTPGGSPRRLI* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1287 616 Gene3D Transferase(Phosphotransferase) domain 1 214 493 - -
Gso6g1287 616 CDD STKc_MEKK1_plant 216 473 - -
Gso6g1287 616 ProSiteProfiles Protein kinase domain profile. 217 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1287 616 ProSitePatterns Protein kinases ATP-binding region signature. 223 246 IPR017441 GO:0005524
Gso6g1287 616 MobiDBLite consensus disorder prediction 1 213 - -
Gso6g1287 616 PANTHER MAP KINASE KINASE KINASE 1 599 - -
Gso6g1287 616 SMART serkin_6 217 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1287 616 SUPERFAMILY Protein kinase-like (PK-like) 215 556 IPR011009 -
Gso6g1287 616 MobiDBLite consensus disorder prediction 85 139 - -
Gso6g1287 616 Pfam Protein kinase domain 218 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1287 616 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 599 - -
Gso6g1287 616 MobiDBLite consensus disorder prediction 195 213 - -
Gso6g1287 616 MobiDBLite consensus disorder prediction 12 26 - -
Gso6g1287 616 MobiDBLite consensus disorder prediction 47 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1287 Gso-Chr6 12589828 12595775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1287 1 536 MAP Kinase Kinase Kinase AT1G53570 57.016 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso6g1287 Pkinase 4.4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1287 K04421 - gmx:100813122 1162.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1787 4 48067477 48073315 Gso6g1287 6 12589828 12595775 GST
Gso5g1630 5 39640326 39645908 Gso6g1287 6 12589828 12595775 PCT
Gso8g0133 8 1224723 1233234 Gso6g1287 6 12589828 12595775 PCT
Gso6g1287 6 12589828 12595775 Gso5g1630 5 39640326 39645908 PCT