Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1285 ATGGCCAAACCAAAAATGCCAGGGTATCGGTTTCAACCCACTGACGTTGAGCTGATTGAGTATTTTCTGAAGAGGAAGGTTCGGGGTAAGAAATTCCCTTCCGAAATAATTGCTGAAGTTGACTTGTACAAGTTTGCTCCGTGGGATCTCCCAGCTATGTCTTTGCTCAAGAATGGGGATTTGAGTTGGTACTTCTTTTGCCCTCGGGGAAAGAAGTATTCGACCGGAGGGAGGTTGAATCGGGCCACCGAGGCTGGGTATTGGAAGACTACTGGGAAGGATAGACCAATTGAACACAATAATACAGTTGTGGGGATGATAAAAACCCTGGTTTTTCACACTGGTAGAGCCCCTAGGGGAGATCGAACTGATTGGGTTATGCATGAATTTAGACTTGATGACAAGGTGCTGGCTGACGAAGCCGTATCACAGGATGCCTATGTGATTTGTAGGGTGTACCAAAAGGAAGGTCCTGGTCCTAGGAATGGTGCACAGTATGGTAAACCATATGATGAGAAGGAGTGGGAAACAGATGAGGAAATTGATTCTGTACAATCTGCCCCTGTTGCTGCCGTTTGTGCACCTGTTCCTATACAACCTAGTGAAAGCCATATTTCTGTTGCTAATTACACCCATCCCTCTACAAGTGGATGTGCTGGATTGACCTCTGTATCATGTGTATCAGAATTGATGCCCTCATGCTCGACACATCCTTCTGCACTAAACAATCCGGTTGACTCTGTATCATGTGTATCAGAATTGATTCCCTCTTGCTCGGCACACCCTTCAGCACCAAACAGTCAAGTTGGCTCTTTATTATGTGTATCAGAATTGATGCCCTCTTTCTCGCCGCCTTCAACACCAAAAAATCCAGTTTACTCTGTATCATGTGTATCAGAATTGATGCCCTCTTGCTTGGCACATCTTTTGGCATCAAACAATCAAGTTGACTCTGTTCCATGTGTTTCAGAATTCATGCCCTCTTGCTCAGCACATCCTTCAGCACCAAACAGTCAAGTTGGCTCTGTATCATGTGTATCAGGATTGATACCCTCTTTCTTGGCACATTCTTCAGCATCAAACAATCAAGTTGGCTCTGTACCATGTGTACCAGAATTGGTGCCCTCTTGCTTGGCACATCCTTCAGCTCCAAATAATCAAGCTGACGTTGGCATTCTACCTTTTCTTGATTGTTCCATAGAAGATGATGACACATTGGCTGTGAATGAAAACAACAGCATTGAGAACGTTGATGATCCTGATCAGGCAAACAATGCAGAACGTGGACCATGTTCAGATCCACATGCTATTTTTGAGGACTTAGGAGACCTTAACAGCTTGGTTGGATTGGGAGAAGGCAGTTTTTCCTGTGGCCAGAAAAATGAATATACTACAAGCGCAATGCTTTATACAGGTGATATATTTAGGTCTTGTGACCATGACTTTTTGGAGTTGATTGACCTAGAGACGCCGCCACCGCTCTGGCAGAATAAACATGGAAGTGATAGCCAAGATAAGTAA 1521 0.4438 MAKPKMPGYRFQPTDVELIEYFLKRKVRGKKFPSEIIAEVDLYKFAPWDLPAMSLLKNGDLSWYFFCPRGKKYSTGGRLNRATEAGYWKTTGKDRPIEHNNTVVGMIKTLVFHTGRAPRGDRTDWVMHEFRLDDKVLADEAVSQDAYVICRVYQKEGPGPRNGAQYGKPYDEKEWETDEEIDSVQSAPVAAVCAPVPIQPSESHISVANYTHPSTSGCAGLTSVSCVSELMPSCSTHPSALNNPVDSVSCVSELIPSCSAHPSAPNSQVGSLLCVSELMPSFSPPSTPKNPVYSVSCVSELMPSCLAHLLASNNQVDSVPCVSEFMPSCSAHPSAPNSQVGSVSCVSGLIPSFLAHSSASNNQVGSVPCVPELVPSCLAHPSAPNNQADVGILPFLDCSIEDDDTLAVNENNSIENVDDPDQANNAERGPCSDPHAIFEDLGDLNSLVGLGEGSFSCGQKNEYTTSAMLYTGDIFRSCDHDFLELIDLETPPPLWQNKHGSDSQDK* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1285 506 PANTHER PLANT NAC DOMAIN PROTEIN 4 491 - -
Gso6g1285 506 MobiDBLite consensus disorder prediction 413 434 - -
Gso6g1285 506 Pfam No apical meristem (NAM) protein 7 132 IPR003441 GO:0003677|GO:0006355
Gso6g1285 506 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Gso6g1285 506 SUPERFAMILY NAC domain 6 155 IPR036093 GO:0003677|GO:0006355
Gso6g1285 506 Gene3D NAC domain 14 157 IPR036093 GO:0003677|GO:0006355
Gso6g1285 506 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1285 Gso-Chr6 12552963 12556504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1285 1 273 NAC Transcription Factor Family AT5G09330 49.638 1.94e-88 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso6g1285 NAM 1.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1285 - - gmx:100170707 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1790 4 48113653 48118040 Gso6g1285 6 12552963 12556504 GST