Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1278 ATGAGTGGAAGTGGCAAAAAGCGCTCTTCAAAGTGGGATTTGAGAGACAATCCTGATTTTTCTCCTGATGATGGTAAGCAATTGCGGTCTGGGTGGTCCTCTGCAGGTGATAAATTAAAGCATTTTTCTGGAGGCAGAGGATCAAATAAGGATAATATTATGAATAAAGATTATAGAGTTTTGGATTCAACAATGGAATGGGATGAGGATGAAAGTTATGACCATAAAATGTCTCCTGGGTTGGATGCATGGAAACATAAGAGACATAATAGTCAATCCCCCAAAAATGGTTGGAGCAGGTCGGTCAGCAGGAGTAGTCGAAGCAGGAGCCCTCCTCATGGTTTTAGGTGGGATTCGGGAGTCAATGACAGAAGTAGAATGCGGGCTGGAGGATCGACACAACCATGTAGAGATTTTGCTGCTGGTAAATGCAGAAGAGGCAGTCACTGTCATTTTCTTCATGATAATCAAAATCACGAGGATGGTTGGGAAGATAAGTACAGGGAAGATGGAGCTCCCAGATATTCTGCTCCCCGCGAGGGTAGAGACTATTCTCTTAAGAGCGGTAGATCTGATGAAGCTTGTATTAATTTTCCAAAAGGAAGGTGTAGAATGGGAGCATCATGCAAGTTTGTGCATCATAACAATTCTGATGGGCACAGTAAAGTTTCTGTGGATGGATTAACTAGAGAGAGGGAAATTGATAGAAGGCACAGAGACAGTTCTTTTGAGCAGGGTAGCGGGCATGGACCAAACCGTGGTGATACTCTTTGCAAATTTTTTGCTAATGAAAGTTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGACAGGCAAGCATGTAGAAGCCATAATAGAAGATTAAGAGATGATAGGTGGGCAAGCAATCCTGGAGGAGATTATCATATGCTGGATAGACCGAAATTGAGTGATTCAGTTAGTCCAAATAGAAGGCCAAGGGGTGATAGGTGGGGTTCTGATGGTAACAAGGCTGATGCAGATAAAGTTTGGGACAGTCCAGAGCGGAATGATACAGTGGCTGTCTCTGATACAGCAAAGCTGGTTGAGGACAAAAGTGAAAATGTGGTTGCCGCTGAGCAAGGATTCACTCCTTTGGCTATGAGGGATGGATGGGGTCATAGTTTGGATAAAAGCAGAGTGCATAGTAAACAGCCATTTTCAAGTGATAAGAAGGAAGCTGACAGTTGGATAGCAGGAAATGCTGCCAACATGCACGGTTCCCAGTCAGTAGGTACAGACATTTGGTTGGGTGATGATGCAAAAATGTCTCCTGATTGGGATTACAGGGTGAGATCTTCCAGCTGTATTGAAGAAAAGCATGAACAAAATAAGCATGGGATAACGCAGGGTTTTATGTATTTAGCCACCTCTGAACATGACAGAATACAAATTGCTCCAGGACAAGATTTTAATCAGAATGCAGAGAGTTTTAATCCTTTGCATTCTTCAAGCTGCCAAGTAGTTGGACAAACTCAAGTAGCAGCTCCCATTCTACCTTCACAGGGTGGAATTGTTGATGGTATGCTGAAACAGGAAGTCTCTACTGAGAAAAAATACACTACTGAACCAAATATCATGGATGCTGGCTTATTACAAGTTAGTTCAAGAGATCCTCCTCCAACTGAGAACGTGGTAGGCAAAGAACAGCTTGCTCAGCTTACCAATCTCTCAGCCTCACTGGCTCATATCCTTGGAACAGGGCAACAGCTGCCACAACTTTATGCTGCTTTAAATTCTCATGATGCAAAGGGCACATCCTCCCTAGCAAAGGCTGAGGTGCTTGCTATGCCTCTTTCCAACACACTCATCAGGCCAGATCCTGCTGTTGGACTCCTGAAGCAGTATGATCCAATGTGTGACAGTGTTGAGCCAAAGAGTGCTGTTGCAAGTAGTGGGGTAACCCCAGCCATTCCCCCATGTAAAAAAGTTGCAGAAGATGTAGTGGAAATTTCATCACAGTCCAACACAGCAAGACAAAATTGTGGCAATTCTTCCAAGTCTGCTGGCTCAGAAGAACTTGTCAAGAGTGATCCTCTAATCCTGTTGCAGCCAGGTCAAAACATTGGGGTTAATAAAGATGATAACAAGGAAGTGTTACCTGAGGAAAGGCAAAAATCTAAAGATGATCCTAAAAATACCAAAGAGAGTGGTCCTTTGGAAAACATGGAGCAAACTGATGGTCCTGATGAGGCAAAGAAAACAAAGGGAATGAAGGGGAGTCGTGCATTTAAATTTGCATTGGTCGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGATGGTCAAATCACCAAAGATGATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTTCCATGCAGGGGGCCAATATTCCTCAGACACAGGAGAAAATTGACCACTATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCGTATGTGGAAAAGGTTCAGAAGGCTTAG 2487 0.4278 MSGSGKKRSSKWDLRDNPDFSPDDGKQLRSGWSSAGDKLKHFSGGRGSNKDNIMNKDYRVLDSTMEWDEDESYDHKMSPGLDAWKHKRHNSQSPKNGWSRSVSRSSRSRSPPHGFRWDSGVNDRSRMRAGGSTQPCRDFAAGKCRRGSHCHFLHDNQNHEDGWEDKYREDGAPRYSAPREGRDYSLKSGRSDEACINFPKGRCRMGASCKFVHHNNSDGHSKVSVDGLTREREIDRRHRDSSFEQGSGHGPNRGDTLCKFFANESCRNGKYCRFSHDRQACRSHNRRLRDDRWASNPGGDYHMLDRPKLSDSVSPNRRPRGDRWGSDGNKADADKVWDSPERNDTVAVSDTAKLVEDKSENVVAAEQGFTPLAMRDGWGHSLDKSRVHSKQPFSSDKKEADSWIAGNAANMHGSQSVGTDIWLGDDAKMSPDWDYRVRSSSCIEEKHEQNKHGITQGFMYLATSEHDRIQIAPGQDFNQNAESFNPLHSSSCQVVGQTQVAAPILPSQGGIVDGMLKQEVSTEKKYTTEPNIMDAGLLQVSSRDPPPTENVVGKEQLAQLTNLSASLAHILGTGQQLPQLYAALNSHDAKGTSSLAKAEVLAMPLSNTLIRPDPAVGLLKQYDPMCDSVEPKSAVASSGVTPAIPPCKKVAEDVVEISSQSNTARQNCGNSSKSAGSEELVKSDPLILLQPGQNIGVNKDDNKEVLPEERQKSKDDPKNTKESGPLENMEQTDGPDEAKKTKGMKGSRAFKFALVEFVKELLKPTWKDGQITKDDYKTIVKKVVDKVTGSMQGANIPQTQEKIDHYLSFSKPKLNKLVQAYVEKVQKA* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1278 828 MobiDBLite consensus disorder prediction 701 723 - -
Gso6g1278 828 Pfam RNA-binding, Nab2-type zinc finger 194 213 - -
Gso6g1278 828 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 826 - -
Gso6g1278 828 MobiDBLite consensus disorder prediction 94 112 - -
Gso6g1278 828 MobiDBLite consensus disorder prediction 304 341 - -
Gso6g1278 828 SMART c3hfinal6 252 278 IPR000571 GO:0046872
Gso6g1278 828 SMART c3hfinal6 130 156 IPR000571 GO:0046872
Gso6g1278 828 SMART c3hfinal6 189 215 IPR000571 GO:0046872
Gso6g1278 828 MobiDBLite consensus disorder prediction 161 186 - -
Gso6g1278 828 MobiDBLite consensus disorder prediction 691 745 - -
Gso6g1278 828 ProSiteProfiles Zinc finger C3H1-type profile. 252 279 IPR000571 GO:0046872
Gso6g1278 828 MobiDBLite consensus disorder prediction 290 344 - -
Gso6g1278 828 ProSiteProfiles Zinc finger C3H1-type profile. 189 216 IPR000571 GO:0046872
Gso6g1278 828 MobiDBLite consensus disorder prediction 658 679 - -
Gso6g1278 828 MobiDBLite consensus disorder prediction 658 678 - -
Gso6g1278 828 Pfam CCCH-type zinc finger 257 277 IPR041367 -
Gso6g1278 828 SUPERFAMILY CCCH zinc finger 252 277 IPR036855 GO:0046872
Gso6g1278 828 MobiDBLite consensus disorder prediction 1 55 - -
Gso6g1278 828 MobiDBLite consensus disorder prediction 8 23 - -
Gso6g1278 828 MobiDBLite consensus disorder prediction 219 250 - -
Gso6g1278 828 MobiDBLite consensus disorder prediction 69 89 - -
Gso6g1278 828 Gene3D - 126 228 - -
Gso6g1278 828 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 826 - -
Gso6g1278 828 MobiDBLite consensus disorder prediction 69 134 - -
Gso6g1278 828 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 133 155 IPR000571 GO:0046872
Gso6g1278 828 MobiDBLite consensus disorder prediction 219 244 - -
Gso6g1278 828 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1278 Gso-Chr6 12464034 12473347 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso6g1278 zf-CCCH 3.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1278 - K22909 gmx:100803151 1682.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1798 4 48196638 48206321 Gso6g1278 6 12464034 12473347 GST