Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1277 ATGAGAAAACCCACTAAACCCACATTTCTCCATTTCCCAATCTCAATTCTCAGATCCAGCTTCCTCCTCCTTCTCATCTCCATGGCCTCCATTTTCACCCTCTTCCTCATCTTCTTCTTCCTCCACCACCCTCACTCCGCCGTGGCTCAGATCCACCAAGCCTGCAAAGCCACGCGCTTCCCTCTCCAATGCCACTCCTCCCTCCTCCCCAACCTCCCCTCCAACCCCACCCCCCTCCAAATCATCCATTCCGCCCTCACAACCTCCACCTCCAACCTCCTCCTCGCGCGATCCAAGGTGCAGTCCATCGTCGACGCCTCCCCGGACAACCACACCCGCTCCACCGCCGCAAAGAGCTGCCTCCAGGTCCTCCACTACTCCCACCACCGCACCTCCCTCGCCGCCTCCGCCCTCCCCCGCGGCGCCACCAAACACGCCCGCGCCTGGATGAGCGCCTCCCTCGGCTACCAATACGGCTGCTGGAACGGCCTCAAGTACATCAATCACACCTCCCTCGTCGCCCAAACGATGTCGTTCCTCGACTCTCTCACCATTCTCTCCAGCAACGCGCTCAGCATGATCGTCTCCTACGACAGATTCGGAAACGACACCGCGTCTTGGAGGCCGCCCATGACGGAGCGCGACGGGTTCTGGGAGCCATCTGTTACGGAGGGATTCGGGGTGGGACCCGCGGTGCCGTCAAAGTTGACGGCGGACGTTACGGTGTGTAAGGGGAAGGGGAAGGGTGAGGGGCGTTATTACGAGACGGTGCAGGAAGCGGTTAATGCGGCGCCGGATGAGGGGGAAAAGAGGTTTGTGATATATATAAAAGAAGGGGTTTATGAAGAGAGGGTGAGGGTTCCGTTGAAGAAGAGGAATGTGGTGTTCTTGGGAGATGGCATGGGCAAAACTGTCATTACGGGATCAGCTAACGTGGGCCAGCCCGGGATGACAACCTACAACTCTGCAACAGTAGGGGTTGCTGGGGATGGATTTATAGCAAAGGATCTCACAATCCAAAATACAGCCGGTGCTAATGCTCACCAAGCAGTGGCCTTCAGATCAGACAGTGATCTTTCTGTCATTGAGAACTGTGAATTCATTGGCAATCAAGATACTCTTTATGCTCATTCCCTGCGCCAATTTTATAGATCTTGCCGCATAATTGGCAACGTGGACTTCATCTTCGGAAACTCTGCAGCAATCTTCCAAGACTGCGAAATCCTAGTCCGCCCCAGGCAAGCCAGACCAGAGAAGGGAGAGAACAACGCAATTACCGCACATGGCAGGACAGACCCTGCTCAGTCAACAGGGTTTGTTTTCCAGAACTGCATGGTTAATGGTACCGAGGAATACATGGCATTGTATTATAGCAAGCCTAAAGTTCACAAGAACTATCTGGGGAGGCCATGGAAGGAGTATTCTAGAACAGTTTTCATCCATTCATTCTTCGAAGCCCTTATCACACCACAGGGCTGGATGCCATGGAGTGGGGATTTTGCACTGAAAACACTTTATTATGGGGAGTTCCAGAACTCAGGACCTGGTTCTAATCTGACTCAGAGGGTGCCCTGGAGTAACCAGGTCCCAGCCGAGCATGTGTTCTCGTATTCAGTGCAGAGTTTCATTCAAGGAGATGATTGGAATCATCATCTCAGTTAG 1662 0.5379 MRKPTKPTFLHFPISILRSSFLLLLISMASIFTLFLIFFFLHHPHSAVAQIHQACKATRFPLQCHSSLLPNLPSNPTPLQIIHSALTTSTSNLLLARSKVQSIVDASPDNHTRSTAAKSCLQVLHYSHHRTSLAASALPRGATKHARAWMSASLGYQYGCWNGLKYINHTSLVAQTMSFLDSLTILSSNALSMIVSYDRFGNDTASWRPPMTERDGFWEPSVTEGFGVGPAVPSKLTADVTVCKGKGKGEGRYYETVQEAVNAAPDEGEKRFVIYIKEGVYEERVRVPLKKRNVVFLGDGMGKTVITGSANVGQPGMTTYNSATVGVAGDGFIAKDLTIQNTAGANAHQAVAFRSDSDLSVIENCEFIGNQDTLYAHSLRQFYRSCRIIGNVDFIFGNSAAIFQDCEILVRPRQARPEKGENNAITAHGRTDPAQSTGFVFQNCMVNGTEEYMALYYSKPKVHKNYLGRPWKEYSRTVFIHSFFEALITPQGWMPWSGDFALKTLYYGEFQNSGPGSNLTQRVPWSNQVPAEHVFSYSVQSFIQGDDWNHHLS* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1277 553 Pfam Plant invertase/pectin methylesterase inhibitor 50 193 IPR006501 GO:0004857
Gso6g1277 553 SMART PMEI_2 46 193 IPR006501 GO:0004857
Gso6g1277 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 196 IPR035513 -
Gso6g1277 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 194 IPR035513 -
Gso6g1277 553 Pfam Pectinesterase 240 546 IPR000070 GO:0030599|GO:0042545
Gso6g1277 553 SUPERFAMILY Pectin lyase-like 238 550 IPR011050 -
Gso6g1277 553 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 32 549 - -
Gso6g1277 553 TIGRFAM PME_inhib: pectinesterase inhibitor domain 28 194 IPR006501 GO:0004857
Gso6g1277 553 PANTHER PECTINESTERASE 32 549 - -
Gso6g1277 553 CDD PMEI-like_3 54 194 - -
Gso6g1277 553 Gene3D - 233 552 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1277 Gso-Chr6 12459066 12462066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1277 46 548 Carbohydrate Esterase AT5G09760 65.820 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1277 - - gmx:100802102 1091.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1619 5 39502015 39504624 Gso6g1277 6 12459066 12462066 PCT
Gso6g1277 6 12459066 12462066 Gso5g1619 5 39502015 39504624 PCT