Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1274 ATGGCTCCAGCCACCACCAATTCCTCGCCCTCGGCTCAGCGCCACGTCGGCTTCAGCCGGCGCACGCAGGCGCCGCGCCAGCTGGACGGCGACTCGCCGCCAGTGAATAAGTACCGGATGCTGTCAGAGATAATGGCGCGCGCGCCGTACGCGGTGGTGGAGAGAGAAACTTACAGCGACCTCTTGTGCGACCAATGCGGCTCCGGCGAGCTGCCGGAGGAGCTGCTTCTCTGCGACAAATGCGATAAAGGCTTTCACATGAAATGCGTGAGGCCTATCGTCGTGAGGATTCCGATTGGATCGTGGCTTTGCCCTAACTGTCAAGGAGGGAAGAGAGTGCGGCCTTTCTCTCAGAAGAAGATAATCGATTTCTTCGGGATTCGGAGGAGTTCTGATGATGCTAATGATAAGCGTTCCTCTCAGGATGCTAAAAAGCGTAAGAAATGTTCACGACCTCTGGTATTACATAAGAAAAAGAGGAGATTGTTACCATTTGTTCCTACAAAAGATCTTAACCGGAGATTGAAACAGATGGGTTCTCTTGCTTCTGCTTTAACAGCCTTAAATATGGAATTCAGTGATCACCTCACATACTTGCCTGGAATGGCTCCTAGATGTGCAAATCAAGCCTTACTTGAAAATGGCGGCATGCAGACTCTTTCCAAGGAAGACATGGAGACCTTAGAACAATGCATTGCTTTGTCTAAAAGAGGCGAATTCCCTCCCTTTATGGTTGTTTATGATTCACGTGAAGGCTATACTGTTGAGGCTGATGACCTAATCAAGGATATGACGATTATTGCTGAATACACTGGTGATGTGGATTACCTTGACACACGGGAACGTGATGACTGTGACAGTATGATGACCCTTCTTCTTGGAGCAGAAAGTTCTCAAAGTCTTGTTATTTGTGCTGATAAACGAGGAAACATTGCTCGCTTTATCAGTGGCATAAATAATCACACACAGGAAGGTAGGAAGAAGCAGAATTGTAAGTGTGTGAGATACAATGTTAATGGTGAATGCAGGGTCTTTTTGGTTGCCATTCGTGATATTTCCAAGGGAGAGAGGCTATATTATGATTATAATGGTCATGAGTATCAATACCCGACTCATCATTTTGTCTGA 1128 0.469 MAPATTNSSPSAQRHVGFSRRTQAPRQLDGDSPPVNKYRMLSEIMARAPYAVVERETYSDLLCDQCGSGELPEELLLCDKCDKGFHMKCVRPIVVRIPIGSWLCPNCQGGKRVRPFSQKKIIDFFGIRRSSDDANDKRSSQDAKKRKKCSRPLVLHKKKRRLLPFVPTKDLNRRLKQMGSLASALTALNMEFSDHLTYLPGMAPRCANQALLENGGMQTLSKEDMETLEQCIALSKRGEFPPFMVVYDSREGYTVEADDLIKDMTIIAEYTGDVDYLDTRERDDCDSMMTLLLGAESSQSLVICADKRGNIARFISGINNHTQEGRKKQNCKCVRYNVNGECRVFLVAIRDISKGERLYYDYNGHEYQYPTHHFV* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1274 375 MobiDBLite consensus disorder prediction 1 20 - -
Gso6g1274 375 Gene3D SET domain 145 375 IPR046341 -
Gso6g1274 375 SMART PHD_3 62 108 IPR001965 -
Gso6g1274 375 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 18 373 - -
Gso6g1274 375 MobiDBLite consensus disorder prediction 1 33 - -
Gso6g1274 375 ProSitePatterns Zinc finger PHD-type signature. 63 107 IPR019786 -
Gso6g1274 375 CDD PHD_RSF1 62 107 - -
Gso6g1274 375 SUPERFAMILY FYVE/PHD zinc finger 50 114 IPR011011 -
Gso6g1274 375 Pfam SET domain 277 363 IPR001214 GO:0005515
Gso6g1274 375 SUPERFAMILY SET domain 197 366 IPR046341 -
Gso6g1274 375 Pfam PHD-finger 63 108 IPR019787 -
Gso6g1274 375 ProSiteProfiles SET domain profile. 241 363 IPR001214 GO:0005515
Gso6g1274 375 PANTHER HISTONE ACETYLTRANSFERASE 18 373 - -
Gso6g1274 375 CDD SET_ATXR5_6-like 238 375 - -
Gso6g1274 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 120 IPR013083 -
Gso6g1274 375 ProSiteProfiles Zinc finger PHD-type profile. 60 110 IPR019787 -
Gso6g1274 375 SMART set_7 242 369 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1274 Gso-Chr6 12435130 12439322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1274 29 145 C2H2 Transcription Factor Family AT3G01460 31.707 5.90e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso6g1274 SET 3.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1274 K24406 - gmx:100808815 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1801 4 48227293 48231395 Gso6g1274 6 12435130 12439322 GST