Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1271 ATGGTGAGAGCAAGAGACGATCTATGCATAAGCGTTCCCAGCTTCTTCAAGTGCCCCATCTCTCTCGACGTCATGAAATCCCCTGTCAGCCTCTGCACCGGAGTCACCTACGACCGCTCCAGCATCCAACGCTGGCTCGACGCCGGCAACAACACCTGCCCCGCCACCATGCAACTCCTCCATACCAAAGACTTCATCCCCAACCGTACTCTCCAAAGCCTCATCCAGATCTGGTCCGATTCGCTTCTTCGCCACCCAACCCCTTCCGAACCGCTCCCTTCCCCTGACCAAGTCCTCCGAACCGTCTTCGACTTCAAATCCGACTCGGACTCCCTCCGGTTCGGTTCGCTCTCGAAACTCCTCCTCTTCGCCAAAGATTCTCTCCAAAACAAACTTTTCCTCGCAAAATTAGAAGGCTTCGTGAATCAACTCGTTCGCTTCCTCCATAATGTCGACGTCGGAGTAACCGCGGGAACGAGTGTTGAATTTCTCGAACAAGTCGTTATCGTGTTGGGTTTGATTCTCGATAGCATCGAGGATCGCGAGGGATTGAAAAACTCTATGCTGAAAGGAAAGAAACAAAGCTTAGATTCTCTGCTTTTAGTTCTCCAACGAGGAAGCTTGGAATCAAAAATTGCCTCCGCTAGGGTTCTTCAATTCGTCGCCGTGGACGCGGAGGCGAAGATTTCAATCGCCGAGAAGGAAAGTGTGGTGGCGGAGTTGCTGAAATCGGCGGCGCCGGAGAAAGATGCGGCGCTGATCGAGGCCGCTCTGGCGAGCCTGGTGGCGATTTCGGCGCCGAAGCGGAACAAGTTGAAGCTGGTGAACCTCGGAGCGGTGAAGGCGATGACGAGGCTGTTGACGGAGGCGAATTTGGGCGCCGCGGCGGTGGAGAAGGTGTTGAAGATTGTGGAGACGGCGTCATCGACGAGGGAGGGGCGGAGCGAGATATGCGAGGAGGCGACGGCGGCGTGTGTGGCGGCGGTGCTGAGCAAGGTTCTGAAGGTGTCGAGCGCGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCTTGTGTTACCTGTTCCGCGATCGCAAGGCACAGGAGGCGGTGACGCAGAACAATGGCTTGACCAAGATTCTGTTGCTGATGCAGAGCAATTGTGCGCCGCACGTGCGACAAATGTGCACCGATTTGCTCAAGATTTTTCTGGCGAACTCCAAGTCTTGCCTTTCGTGCTACGACACCAAAACCACGCATATCATGCCGTTTTGA 1254 0.555 MVRARDDLCISVPSFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDAGNNTCPATMQLLHTKDFIPNRTLQSLIQIWSDSLLRHPTPSEPLPSPDQVLRTVFDFKSDSDSLRFGSLSKLLLFAKDSLQNKLFLAKLEGFVNQLVRFLHNVDVGVTAGTSVEFLEQVVIVLGLILDSIEDREGLKNSMLKGKKQSLDSLLLVLQRGSLESKIASARVLQFVAVDAEAKISIAEKESVVAELLKSAAPEKDAALIEAALASLVAISAPKRNKLKLVNLGAVKAMTRLLTEANLGAAAVEKVLKIVETASSTREGRSEICEEATAACVAAVLSKVLKVSSAATEHAVTTLWSLCYLFRDRKAQEAVTQNNGLTKILLLMQSNCAPHVRQMCTDLLKIFLANSKSCLSCYDTKTTHIMPF* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1271 417 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Gso6g1271 417 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 6 417 - -
Gso6g1271 417 SUPERFAMILY ARM repeat 70 403 IPR016024 -
Gso6g1271 417 CDD RING-Ubox_PUB 16 58 IPR045210 -
Gso6g1271 417 SUPERFAMILY RING/U-box 6 79 - -
Gso6g1271 417 Gene3D - 96 406 IPR011989 -
Gso6g1271 417 PANTHER WDSAM1 PROTEIN 6 417 IPR045185 GO:0061630
Gso6g1271 417 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Gso6g1271 417 Pfam U-box domain 12 79 IPR003613 GO:0004842|GO:0016567
Gso6g1271 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 86 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1271 Gso-Chr6 12393516 12395169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1271 5 417 U-box Gene Family AT5G64660 50.474 2.33e-141 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1271 - - gmx:100801033 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1613 5 39440335 39442039 Gso6g1271 6 12393516 12395169 PCT
Gso8g1235 8 11326202 11327811 Gso6g1271 6 12393516 12395169 PCT
Gso6g1271 6 12393516 12395169 Gso5g1613 5 39440335 39442039 PCT
Gso6g1271 6 12393516 12395169 Gso8g1235 8 11326202 11327811 PCT