Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1270 ATGAGTTTGATGGAAACAGAAAGCTCAGAAGAGGGTGCAGGCCTTCTAGAGCCTCCTGATCCTAACGTTCTTGAAATCGATCCTACTAATCGCTACATGAGGTATAACGAAGTTATTGGCCAAGGAGCTTTCAAGACTGTTTACAAGGCGTTTGATGAAATCATTGGACTTGAAGTTGCATGGAGCCAAGTTCAGATTGATGAGGTATTGCAGACACCAGGTGGCTTAGAGAGGCTTTACTCAGAAGTGCATCTATTGAAGTCACTAAAGCACGACAGCATAGTAACTTTCTACAATTCCTGGATTGATGACAAGCACAGAACTCTTAACTTGATTACCGAGTTGTTCACCTCAGGGAGCCTCAGAAAGTATAGTAAGAAACACAAGAAGGTTGACATAAAGGCCGTTAAAGGATGGGCAAAGCAGATTTTAATGGGTTTAAACTATCTCCACAGTCACAACCCACCTATTATACATAGGGACCTGAAGTGTGATAATATATTTATTAATGGTCACCGAGGAGAAGTTAAAATTGGCGATCTAGGGTTGGCAACTCTGTTGAAGCAGACTACTGCCAAGAGTGTAATTGGAACCCCGGAGTTCATGGCACCTGAACTGTATGATGAACATTATAATGAATTAGCCGACATATATTCTTTTGGGATGTGCATGCTTGAGTTGGTTACGTCTGAATATCCTTACAGTGAATGTAGAAACTCAGCTCAGATATACAAGAAAGTTTCATCTGGCATAAAGCCTGCTGCTCTTTCCAAACTCAAGGATCCAGAAGTAAAATCATTTATTGAGAAATGTCTTGTCCCAGCATCTCAAAGATTGTCAGCAAAGGAGCTTCTGAAGGACAATTTTCTCCAAGTGAATGGTTCATTGAAGAATCGTCGACTTCCATTGCCAGATATTGTTCTCCCTAAATATGGAACCTTCGAAAATCGTTGTCTTATGTCAGAAGGCCCAGCTAGTACACGTATTAGATCCATTTCAATGGATCTTGGTGATGCCACTGAGCTTCCATTGACCACTTTACTTTATAATTCTGTTGATTCTATTGACAATGCATTGCCTTCCCCATGTGTTGAGATACGAAGGTTGAAGGAAGGTGACATATTTTTTCTAAAAGGTGAACAAAATGATGAAAAGTCTGTATCATTAGTTCTCCGCATAGCTGATCAGAATGGGCGGGCAAGAAATATCCATTTCATATTCTACATCAACAGTGATACTGCCATCTCAGTTTCAAGTGAAATGGTTGAACAACTTGAACTTGCTGAGCAGAATGTTAAATTTATAGCAGAGTTAATTGATTTGCTATTGACAACTTTGCTTCCTGATTGGAAACCTTGTGTAGCAATTGATCATTTAGTTTCTTCTAATGGTAAACTAACTCATTCAAGTAAACAGAAAGACTCAGAATTAGCAAAATACAGGCAAAGCTCAGAAGATTCTAGCCAAATTGTGGCTGAAATTGTAGGTCTCTCAACCTCGCCTGGAAGACCGGCAGAAGTGGAAAACATTGATAATGTGATTTGCGACAAGTTTGTGTCTCATGCAAACATTGGTCTTCGAAGAGAATTAAAGACAGATGATTTGTATTTTGAGAAACATAGGTCATACGCTTCTGCAACATCTGACTTCAATGATAAGCATTTTTCTACAGTTTCGTTCATGTCTGCTAAATCAGGATTTACAGACTTTGACCTTCCCAAAGTTAATAGTCAATGCTCGCTTGCATCTGAATTCGGGGCAACATTTGATTATAGCAGTTTTCCTTGTGTGGAAAGCAATGGTACGATGAAATTCTCTAGTCATCCCATTAATGCTTCCTGCTTCTTTCAACCTGGGGATGAGTTGAGAATAGAGTTAGAGAGGATTGAGCAACAATATCAGGATGAAATGGAAGATTTATTGAAAAGAAAAAACCATGACATCATGGAGACTAGAAGGAGGCATTCTTAA 1971 0.3927 MSLMETESSEEGAGLLEPPDPNVLEIDPTNRYMRYNEVIGQGAFKTVYKAFDEIIGLEVAWSQVQIDEVLQTPGGLERLYSEVHLLKSLKHDSIVTFYNSWIDDKHRTLNLITELFTSGSLRKYSKKHKKVDIKAVKGWAKQILMGLNYLHSHNPPIIHRDLKCDNIFINGHRGEVKIGDLGLATLLKQTTAKSVIGTPEFMAPELYDEHYNELADIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPAALSKLKDPEVKSFIEKCLVPASQRLSAKELLKDNFLQVNGSLKNRRLPLPDIVLPKYGTFENRCLMSEGPASTRIRSISMDLGDATELPLTTLLYNSVDSIDNALPSPCVEIRRLKEGDIFFLKGEQNDEKSVSLVLRIADQNGRARNIHFIFYINSDTAISVSSEMVEQLELAEQNVKFIAELIDLLLTTLLPDWKPCVAIDHLVSSNGKLTHSSKQKDSELAKYRQSSEDSSQIVAEIVGLSTSPGRPAEVENIDNVICDKFVSHANIGLRRELKTDDLYFEKHRSYASATSDFNDKHFSTVSFMSAKSGFTDFDLPKVNSQCSLASEFGATFDYSSFPCVESNGTMKFSSHPINASCFFQPGDELRIELERIEQQYQDEMEDLLKRKNHDIMETRRRHS* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1270 656 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1270 656 Pfam Protein kinase domain 36 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1270 656 CDD STKc_WNK 31 290 - -
Gso6g1270 656 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 656 - -
Gso6g1270 656 Coils Coil 619 643 - -
Gso6g1270 656 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1270 656 Gene3D Phosphorylase Kinase; domain 1 19 114 - -
Gso6g1270 656 MobiDBLite consensus disorder prediction 1 23 - -
Gso6g1270 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Gso6g1270 656 SUPERFAMILY Protein kinase-like (PK-like) 35 341 IPR011009 -
Gso6g1270 656 Gene3D - 385 484 - -
Gso6g1270 656 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 4 656 - -
Gso6g1270 656 Gene3D Transferase(Phosphotransferase) domain 1 116 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1270 Gso-Chr6 12374853 12379503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1270 133 460 MAP Kinase Kinase Kinase AT1G49160 69.512 7.26e-167 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gso6g1270 Pkinase 3.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1270 K08867 - gmx:121175054 1288.48