Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1267 ATGTATTCTGTTGCTTCCACTTCCCTTACTTCACCACTCCTCCACGACCTTGAGAACTTCCATTACTCAAGAAGGTTACTCCTTCACTCCCCATACCTTAACCAATCAGCCAAACCCCCAAGAAGCAGCCACGATTCTTCAACAGAAACATACCTTGGAGATGGCAATTTCGATGCAAATGTTGTCATGGTACTCTCAATCCTACTCTGTGCTCTCATATGCTCACTGGGGCTAAACTCCATCATAAGGTGTGCACTAAGGTGTTCAAATTTTGTTGTGAGTGACTCAGTGGCAACCAATAACAATAACAACAACCCTCCAGCAGCAAGAGTTGCCAACACAGGAGTGAAGAAGAAAGCACTCAAGACTTTCACCACAGTGAGTTACTCAGCTGAGCTAAACTTGCCAAGTTTGGACTCAGAGTGTGTGATATGCTTGTCAGAGTTCACAAGTGGTGAAAAGGTGCGCATTTTGCCAAAGTGCAACCACGGGTTCCATATTCGCTGCATTGACAAATGGCTAAGTTCACACTCTTCATGCCCCAAATGCAGACAGTGCCTAATTGAGACTTGCCAGAAGATTGTTGGGTGCAGTACTCAACAAGCTAGCTCATCGCAACAACATGTGTTGGCAGTGCCAGAAACCATTGTGACCATAATAGCCCCACTTGAGCCAGAAGGTTTGGTGCGTAACTATAGGGAACTTAGCTAA 711 0.4543 MYSVASTSLTSPLLHDLENFHYSRRLLLHSPYLNQSAKPPRSSHDSSTETYLGDGNFDANVVMVLSILLCALICSLGLNSIIRCALRCSNFVVSDSVATNNNNNNPPAARVANTGVKKKALKTFTTVSYSAELNLPSLDSECVICLSEFTSGEKVRILPKCNHGFHIRCIDKWLSSHSSCPKCRQCLIETCQKIVGCSTQQASSSQQHVLAVPETIVTIIAPLEPEGLVRNYRELS* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1267 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 188 IPR013083 -
Gso6g1267 236 SMART ring_2 142 183 IPR001841 -
Gso6g1267 236 PANTHER RING-H2 FINGER PROTEIN ATL78 4 235 IPR044602 GO:0016567|GO:0016740
Gso6g1267 236 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 235 - -
Gso6g1267 236 SUPERFAMILY RING/U-box 121 189 - -
Gso6g1267 236 CDD RING-H2_PA-TM-RING 141 184 - -
Gso6g1267 236 Pfam Ring finger domain 141 184 IPR001841 -
Gso6g1267 236 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1267 Gso-Chr6 12357099 12358304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1267 25 188 C3H Transcription Factor Family AT3G10910 47.879 1.42e-44 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1267 K19040 - gmx:100807227 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1808 4 48309410 48310453 Gso6g1267 6 12357099 12358304 GST
Gso5g1608 5 39367774 39368881 Gso6g1267 6 12357099 12358304 PCT
Gso8g1230 8 11255954 11256909 Gso6g1267 6 12357099 12358304 PCT
Gso6g1267 6 12357099 12358304 Gso5g1608 5 39367774 39368881 PCT
Gso6g1267 6 12357099 12358304 Gso8g1230 8 11255954 11256909 PCT