Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1263 ATGCTGGAAATCTCAACTTTACCGGAAACCGCGACGGAGAACGCGGACGGCGGTTCCGCGGCGGTATCCGACGGGTCGAAAGCGGAGCACAGCGAAGACGGTGACCGGAATTCCGCCGCGAACCGGTGGCCGAGAGAGGAGACAATGGCTTTGCTCAAGATAAGGTCTGAAATGGACGTTGCTTTCAAAGACGCAAACCCCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAGTTAGCAGAGCTAGGATATAATAGAAGTGCTAAGAAGTGCAAGGAGAAATTCGAGAACGTTTACAAGTACCATAGGAGAACCAAAGAAGGTCGTTTTGGAAAATCAAACGGTGCAAAAACTTATCGATTTTTCGAGCAGTTGGAAGCCTTAGACGGAAACCACTCACTTCCTCCTCCGACAACAACAACCGACAACAACAACAACGTTGATGATGATGATGTTATCCTCAACGCGGTTCCGTGTTCCGTTATAGCTGCGGCGGCGCACGAGCATTCGAGTTCGACGACGTCGTCTTCGGGGAAGATGAAGAGAAAGCTGACGCGGTTTCTGGAGGGGCTGATGAGGGAAGTGATAGAGAAGCAAGAGACGCTGCAGAGAAAGTTCATGGAAGTGTTGGATAAGTGTGAAAAAGATCGAATGGCGAGGGAGGAAGCGTGGAAGAAGGAGGAGCTCGAGAGGATCAAGAAAGAACGCGAGCTTCTCGCTCATGAAAGATCAATTGCTGCCGCCAAAGATGAAGCTGTTCTTGCTTTTCTTAAAAAGTTCGCAGAAGCAGAAGGCACGGTGCAGTTGCTCGAGAAAATTCAGGTTCAGAACGACAAACAGAAAAACAAGCATCAAAATGGTGCTAATGCTAATAGAGGTGGTGATGTCACGGTTGTCACTGATATGGATAAACAAGAATGTGGAAATAATGGTGTTAGTGTTGGGAATTTTGTGCACATGAGTAGTTCGCGGTGGCCGAAGGATGAAGTGGAGGCTTTGATAAGGTTAAGGACTGAGTTTGATGTGCAGGCACAAGGGAATAATAATAATAGTAATAATGGGTCTAAAGGGCCTCTTTGGGAGGAGATATCTTTGGCTATGAAGAGCATTGGTTATGATCGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATAAAGGAGAAGAACAAGAGGAAACCTCAGGATTCCAAGACGTGTCCTTATTATCACCACCTTGAGGCTTTGTACAGTAAGAAGCCTAAGAAGGTGGTGGATCATGGGAACGAGTTGAAGCCTGAGGAGCTGTTAATGCATATCATGGAAAGTCAAAGTCAGGAACAGCAGCAAGAGATGCAGACTCAGACTCAGTCATCATCTGAAGATGCTGAGAGAGATCAGGATCAGAATCAGGATCAAAGTGGGTATCAGAATCAGATGGTTGATAATAATAATAATAATAATAGTCCTTCTTCCATTGCAATTATGAGTTAA 1494 0.4578 MLEISTLPETATENADGGSAAVSDGSKAEHSEDGDRNSAANRWPREETMALLKIRSEMDVAFKDANPKAPLWEQVSRKLAELGYNRSAKKCKEKFENVYKYHRRTKEGRFGKSNGAKTYRFFEQLEALDGNHSLPPPTTTTDNNNNVDDDDVILNAVPCSVIAAAAHEHSSSTTSSSGKMKRKLTRFLEGLMREVIEKQETLQRKFMEVLDKCEKDRMAREEAWKKEELERIKKERELLAHERSIAAAKDEAVLAFLKKFAEAEGTVQLLEKIQVQNDKQKNKHQNGANANRGGDVTVVTDMDKQECGNNGVSVGNFVHMSSSRWPKDEVEALIRLRTEFDVQAQGNNNNSNNGSKGPLWEEISLAMKSIGYDRSAKRCKEKWENINKYFKRIKEKNKRKPQDSKTCPYYHHLEALYSKKPKKVVDHGNELKPEELLMHIMESQSQEQQQEMQTQTQSSSEDAERDQDQNQDQSGYQNQMVDNNNNNNSPSSIAIMS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1263 497 CDD GT1 323 394 - -
Gso6g1263 497 Pfam Myb/SANT-like DNA-binding domain 41 128 IPR044822 -
Gso6g1263 497 Pfam Myb/SANT-like DNA-binding domain 323 416 IPR044822 -
Gso6g1263 497 PANTHER - 1 488 - -
Gso6g1263 497 CDD GT1 41 106 - -
Gso6g1263 497 Coils Coil 231 251 - -
Gso6g1263 497 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 1 488 - -
Gso6g1263 497 MobiDBLite consensus disorder prediction 1 45 - -
Gso6g1263 497 MobiDBLite consensus disorder prediction 470 497 - -
Gso6g1263 497 SMART sant 39 101 IPR001005 -
Gso6g1263 497 SMART sant 321 389 IPR001005 -
Gso6g1263 497 ProSiteProfiles Myb-like domain profile. 323 387 IPR001005 -
Gso6g1263 497 ProSiteProfiles Myb-like domain profile. 35 99 IPR001005 -
Gso6g1263 497 Gene3D - 325 392 - -
Gso6g1263 497 Gene3D - 43 104 - -
Gso6g1263 497 MobiDBLite consensus disorder prediction 442 460 - -
Gso6g1263 497 MobiDBLite consensus disorder prediction 442 497 - -
Gso6g1263 497 MobiDBLite consensus disorder prediction 26 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1263 Gso-Chr6 12313331 12315955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1263 324 493 Trihelix Transcription Factor Family AT1G76880 32.353 1.45e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso6g1263 Myb_DNA-bind_4 3.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1263 - - gmx:100805632 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1812 4 48340516 48342940 Gso6g1263 6 12313331 12315955 GST