Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1261 ATGAAAGGAAACAACCCCTATTTGGTTGTGATTCTCATACAAACCATATATGCTGCTATGATTCTTCTCTCAAAAGTGGCATTCGATCATGGCATGGACAGTTTTATCTTCGTCTTCTATAGACAGGCAGCAGCAACCCTCTTTTTGACCCCTTTCACTTTCTTCTTCGAATGGAAAACTGCACCACCTATGCCTTTTTGGACCTTCTGCAAGATTTTTTTCATTTCTTTATTTGGGATTACTTTAACCTTGGAAATATATGGTATCGCCCTTATTTACACTTCAGTAACTTTGGCTGCTGCTACTTCAAACTCTCTTCCAGCAATCACCTTCTTCTTGGCACTCCTACTAAGGATTGAGAGTTTGAAAATAAAGACGACCCCTGGGATTGTTAAGTTGATAGGCATTGTGGCATGCTTGGCTGGTGCAGCAACCCTTGCCTTTTATAAAGGTCCTCCTTTGAAATTTTTAAGCCATTATCACCTTTTGGATTACCATAAAACCCTACAACATCAAGGTCGTGCTCCATCCGGTGCGTGGATAAAGGGTTGCTTCCTCATGATCCTCTCCAACACGTGTTTCGGGCTATGGTTTGTACTACAGGCTTTTATTATAAAAGTATACCCTTCAAAGCTGCTCTTCACAACTATTCAGTGTTTCTTAAGCTCAATTCAGTCTTTGGTCATTGCCTTGGCAGTAGAAAGGGACATTGAGCAATGGAAGTTAGGTTGGAATGCCAGGCTCCTCGCCGTATTATATTGTGGAATTATGGTCACGGGCGTAACATACTACTTACAAACATGGGTTATAGAGAAGAAAGGACCCGTGTTTCTAGCCATGTCAACTCCACTGGTTCTTATTATTACAACCTTCGCTTCTGCAACCATCTTGGGTGAGATTATCAGTTTGGGAAGTCTTCTCGGAGGATTCATATTGATTCTAGGATTGTACAGCGTATTGTGGGGAAAGAGCAAAGAGCATCACATGCCAAAAGTCTCACTAGACGTGGAGCAAACATCGAGTAATTAA 1029 0.4159 MKGNNPYLVVILIQTIYAAMILLSKVAFDHGMDSFIFVFYRQAAATLFLTPFTFFFEWKTAPPMPFWTFCKIFFISLFGITLTLEIYGIALIYTSVTLAAATSNSLPAITFFLALLLRIESLKIKTTPGIVKLIGIVACLAGAATLAFYKGPPLKFLSHYHLLDYHKTLQHQGRAPSGAWIKGCFLMILSNTCFGLWFVLQAFIIKVYPSKLLFTTIQCFLSSIQSLVIALAVERDIEQWKLGWNARLLAVLYCGIMVTGVTYYLQTWVIEKKGPVFLAMSTPLVLIITTFASATILGEIISLGSLLGGFILILGLYSVLWGKSKEHHMPKVSLDVEQTSSN* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1261 342 Pfam EamA-like transporter family 182 320 IPR000620 GO:0016020|GO:0016021
Gso6g1261 342 Pfam EamA-like transporter family 6 144 IPR000620 GO:0016020|GO:0016021
Gso6g1261 342 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 150 - -
Gso6g1261 342 PANTHER WAT1-RELATED PROTEIN 7 329 IPR030184 GO:0016021|GO:0022857
Gso6g1261 342 PANTHER WAT1-RELATED PROTEIN 7 329 - -
Gso6g1261 342 SUPERFAMILY Multidrug resistance efflux transporter EmrE 239 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1261 Gso-Chr6 12295693 12298138 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1261 1 254 Nodulin-like Gene Family AT5G64700 58.140 2.47e-93 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1261 - - gmx:100798379 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1600 5 39313744 39318744 Gso6g1261 6 12295693 12298138 PCT
Gso8g1225 8 11220704 11225425 Gso6g1261 6 12295693 12298138 PCT
Gso6g1261 6 12295693 12298138 Gso5g1600 5 39313744 39318744 PCT
Gso6g1261 6 12295693 12298138 Gso8g1225 8 11220704 11225425 PCT