Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1259 ATGGATTTGGACGATTTCCGATCCGTATTGGACACCGCGGGCGTCGACGTGTGGATGTTCATCGACGCCGCAATCGCCGTCGCCTCCGCGGATTCCGCCGGTGAGCTGAAGCGCCGCCGCGACGGAATCGTCGAGCGCCTCTACGCCGCCACGGCGGCTACTCCGAAGTGCCGGATTTGCGACGACGGAGGCAATGACCTCAACGGTCACCAAATCAAGAAGCAGAGCAGCCCCAGCCCTGAACGGCAACCGCACCAACGCCGCGCCGCTGCCATCGCAGCTGCCGCTTCCCCGGCGACGCCGCAGTCTCTCGAAAACGACAACGACGGCGAGGAGGATTTAGATCCTTACGGTGGTTTGTTCGACGACGAACAGAAGAAGATTCTCGAGATTAAAGAGCAACTCGAAGAGCCTGACCAGTCTGAAGATTCTTTGGTGGAGTTGCTGCAAAGCCTAGCGGACATGGATATTACATTCCAAGCGTTGAAGGAAACTGACATCGGGAGGCACGTGAATCGGTTACGGAAACATCCTTCAAACGACGTACGGCGATTGGTGAAGTTGCTTGTCAGGAAGTGGAAGGAAATTGTTGATGAATGGGTGAAGTTGAATCCTCAGGGAAGAAGCAACACTCTGATGGCTGATGGAGACTCGCCGCCTGTGCAGAAAACCACCCAAAATGGGCATCATCATCAGCAGGTTGAGATTCCTGATTTTGCATACTCTCCCAATCCACACAATGGTAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACACAAACCCAAAGTAGTTCCCCGCAGTGAACCTAGGCCAAAACCCGCGCCATCACCCTCAGTTTCAACCCCTGCTTCCGCTACTCAAAACAGACAGAGGGATAGCAATTTTGACGCGGAGAGGCTTGCTTCCGCGAGAAGGAGGCTTCAAGAGAACTACAAAGAGGCTGAAATTGCCAAAAGGCAAAGAACGATTCAGGTGATGGACATCCATGAGTTACCGAAGTCAAAACCCAAGAATAATGCCTTCTTTGGGAAGAACAAAGGTGGTGGTGGTGGTGGTGGTTCTCAGGGAAGGCACTGGTGA 1086 0.5368 MDLDDFRSVLDTAGVDVWMFIDAAIAVASADSAGELKRRRDGIVERLYAATAATPKCRICDDGGNDLNGHQIKKQSSPSPERQPHQRRAAAIAAAASPATPQSLENDNDGEEDLDPYGGLFDDEQKKILEIKEQLEEPDQSEDSLVELLQSLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLNPQGRSNTLMADGDSPPVQKTTQNGHHHQQVEIPDFAYSPNPHNGSSGSDRNNSEAEHKPKVVPRSEPRPKPAPSPSVSTPASATQNRQRDSNFDAERLASARRRLQENYKEAEIAKRQRTIQVMDIHELPKSKPKNNAFFGKNKGGGGGGGSQGRHW* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1259 361 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 122 210 IPR035441 -
Gso6g1259 361 Pfam TFIIS helical bundle-like domain 148 197 IPR017923 -
Gso6g1259 361 MobiDBLite consensus disorder prediction 69 83 - -
Gso6g1259 361 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 361 - -
Gso6g1259 361 ProSiteProfiles TFIIS N-terminal domain profile. 123 200 IPR017923 -
Gso6g1259 361 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 126 210 IPR035441 -
Gso6g1259 361 MobiDBLite consensus disorder prediction 255 269 - -
Gso6g1259 361 MobiDBLite consensus disorder prediction 68 119 - -
Gso6g1259 361 CDD TFIIS_I 125 198 - -
Gso6g1259 361 MobiDBLite consensus disorder prediction 207 297 - -
Gso6g1259 361 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 361 IPR044790 -
Gso6g1259 361 MobiDBLite consensus disorder prediction 332 361 - -
Gso6g1259 361 SMART TFS2_5 128 199 IPR003617 GO:0005634
Gso6g1259 361 Coils Coil 299 326 - -
Gso6g1259 361 MobiDBLite consensus disorder prediction 207 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1259 Gso-Chr6 12272574 12275281 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gso6g1259 Med26 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1259 - - gmx:100804034 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1815 4 48385895 48389105 Gso6g1259 6 12272574 12275281 GST
Gso5g1599 5 39298695 39301516 Gso6g1259 6 12272574 12275281 PCT
Gso8g1224 8 11206050 11208824 Gso6g1259 6 12272574 12275281 PCT
Gso6g1259 6 12272574 12275281 Gso5g1599 5 39298695 39301516 PCT
Gso6g1259 6 12272574 12275281 Gso8g1224 8 11206050 11208824 PCT