Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1254 ATGGACTTCGACGAGTACGATTACTTGGAGAAAACAGTGGAGGAGCAAGAGGACCACGACAGCAGCCGGAAGAAGAAGGAGAGCGAGAGGAGCTACAGGAAGCGCGAGGAGATCGACGAGGGAATCGAAGAGACGAAGAGCAAGAGGTCCAGGGGCGACGAAGAGAACGGCTCCAAGAAGGATAAGGACCGCGAAGAACGCGACAGGGAGCGCCGCAGGGACAGGGATAGAGATGGTGAGAGAAGTAGCAGAGACAGGGATAGGGATAGGGATAGGGAGAAGGAGAGAGAGAAAGGGAGGGAACGGAGGGAAAAGGATAAAGAGAGGGAGAAGAGGGAGAAGGAGAAAGAGAAGGAGAAGGAGAGGGAAAGAGAAAGAAGGGAGAGGGAACGGGAACGGGAAGAGAGAGAGAGGTCTCGGAGGAGTAGGAGTCGTTCCGAGAGAGAAAGAGAAAGAGAACGGGATTTCGACACCAGAGATAGCAGGAGATTTAGGGACAAAAAAGAGGCAGCGGAGCCCGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATGCCCTTAAAGGCATCGGAGAGGGATGCTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGGGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAGTTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTAGGACAACCTGTAATGGTCAAGCCTTCTGAGGCTGAAAAGAACCTTGTCCAATCTAATGCTACCAGTGGAGCTGCTGGAGTAGTAGGACCATATGGAGCTGTGGACAGGAAACTATATGTGGGGAACCTTCACTTTAACATGACGGAGAGTCAATTGAGAGAGATTTTTGAGCCATTTGGTCCGGTAGAGATTGTACAACTACCTCTTGACTTGGAGACGGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCTGCGCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACAGATCATGTTGGAAACCAAGATACAACTGCCAAATCTGCAGATTTTGATGATGATGAAGGTGGATTGTCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGCTGGACCGCTCTGGCATTGCTGCAAGCATTGGTCTGCCCATTGCGAATGGGTCATCTCCTGCTCAACAGGCTATTATGCCTATTGGTAATCCAGGTATAGTACCAGCAGTTGCACCAGCTGTCCCAACACAAATTATGCCTATCCCAGTGACTGAACCTGTTGGAAACCCCAGTGAGTGTTTACTGTTGAAGAACATGTTTGATCCAAACACTGAGACCGAACCAGATTTTGATCTAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCCAAATATGGACGAGTGAAGCATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACAGTGGAAGCAGCAAGTGCTGCTCAACGTGCAATGCACACAAGGTGGTTTGCAGGCAGAATGATATCTGCTATCTATATGCTACCTCAGATGTATGAAACCAAATTTAAAGGTGACGCTTGA 1650 0.4715 MDFDEYDYLEKTVEEQEDHDSSRKKKESERSYRKREEIDEGIEETKSKRSRGDEENGSKKDKDREERDRERRRDRDRDGERSSRDRDRDRDREKEREKGRERREKDKEREKREKEKEKEKERERERREREREREERERSRRSRSRSERERERERDFDTRDSRRFRDKKEAAEPEADPERDQRTVFAYQMPLKASERDAYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEIVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLSLNAQSRALLMQKLDRSGIAASIGLPIANGSSPAQQAIMPIGNPGIVPAVAPAVPTQIMPIPVTEPVGNPSECLLLKNMFDPNTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEAASAAQRAMHTRWFAGRMISAIYMLPQMYETKFKGDA* 550
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1254 549 CDD RRM2_RBM23_RBM39 286 358 - -
Gso6g1254 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 259 IPR000504 GO:0003723
Gso6g1254 549 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 377 473 IPR029123 -
Gso6g1254 549 CDD RRM3_RBM39_like 454 536 - -
Gso6g1254 549 Gene3D - 110 270 IPR012677 -
Gso6g1254 549 SUPERFAMILY RNA-binding domain, RBD 452 535 IPR035979 GO:0003676
Gso6g1254 549 Gene3D - 280 376 IPR012677 -
Gso6g1254 549 SUPERFAMILY RNA-binding domain, RBD 175 263 IPR035979 GO:0003676
Gso6g1254 549 MobiDBLite consensus disorder prediction 12 181 - -
Gso6g1254 549 Gene3D - 451 548 IPR012677 -
Gso6g1254 549 Coils Coil 98 149 - -
Gso6g1254 549 TIGRFAM SF-CC1: splicing factor, CC1-like family 66 545 IPR006509 GO:0003723|GO:0005634|GO:0006397
Gso6g1254 549 SMART rrm2_1 461 534 IPR003954 GO:0003676
Gso6g1254 549 CDD RRM1_RBM39_like 183 255 - -
Gso6g1254 549 SMART rrm1_1 285 358 IPR000504 GO:0003723
Gso6g1254 549 SMART rrm1_1 456 534 IPR000504 GO:0003723
Gso6g1254 549 SMART rrm1_1 183 255 IPR000504 GO:0003723
Gso6g1254 549 MobiDBLite consensus disorder prediction 1 182 - -
Gso6g1254 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 362 IPR000504 GO:0003723
Gso6g1254 549 PANTHER CC1-LIKE SPLICING FACTOR 1 548 - -
Gso6g1254 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 460 538 IPR000504 GO:0003723
Gso6g1254 549 SUPERFAMILY RNA-binding domain, RBD 283 361 IPR035979 GO:0003676
Gso6g1254 549 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 356 IPR000504 GO:0003723
Gso6g1254 549 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 251 IPR000504 GO:0003723
Gso6g1254 549 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 478 531 IPR000504 GO:0003723
Gso6g1254 549 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 548 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso6g1254 Gso-Chr6 12223637 12230938 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1254 256 357 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 3.50e-08 54.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1254 K13091 - gmx:100802446 755.747
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1595 5 39241147 39249194 Gso6g1254 6 12223637 12230938 PCT
Gso8g1220 8 11152317 11159954 Gso6g1254 6 12223637 12230938 PCT
Gso6g1254 6 12223637 12230938 Gso5g1595 5 39241147 39249194 PCT
Gso6g1254 6 12223637 12230938 Gso8g1220 8 11152317 11159954 PCT