Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso6g1254 | ATGGACTTCGACGAGTACGATTACTTGGAGAAAACAGTGGAGGAGCAAGAGGACCACGACAGCAGCCGGAAGAAGAAGGAGAGCGAGAGGAGCTACAGGAAGCGCGAGGAGATCGACGAGGGAATCGAAGAGACGAAGAGCAAGAGGTCCAGGGGCGACGAAGAGAACGGCTCCAAGAAGGATAAGGACCGCGAAGAACGCGACAGGGAGCGCCGCAGGGACAGGGATAGAGATGGTGAGAGAAGTAGCAGAGACAGGGATAGGGATAGGGATAGGGAGAAGGAGAGAGAGAAAGGGAGGGAACGGAGGGAAAAGGATAAAGAGAGGGAGAAGAGGGAGAAGGAGAAAGAGAAGGAGAAGGAGAGGGAAAGAGAAAGAAGGGAGAGGGAACGGGAACGGGAAGAGAGAGAGAGGTCTCGGAGGAGTAGGAGTCGTTCCGAGAGAGAAAGAGAAAGAGAACGGGATTTCGACACCAGAGATAGCAGGAGATTTAGGGACAAAAAAGAGGCAGCGGAGCCCGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATGCCCTTAAAGGCATCGGAGAGGGATGCTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGGGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAGTTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTAGGACAACCTGTAATGGTCAAGCCTTCTGAGGCTGAAAAGAACCTTGTCCAATCTAATGCTACCAGTGGAGCTGCTGGAGTAGTAGGACCATATGGAGCTGTGGACAGGAAACTATATGTGGGGAACCTTCACTTTAACATGACGGAGAGTCAATTGAGAGAGATTTTTGAGCCATTTGGTCCGGTAGAGATTGTACAACTACCTCTTGACTTGGAGACGGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCTGCGCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACAGATCATGTTGGAAACCAAGATACAACTGCCAAATCTGCAGATTTTGATGATGATGAAGGTGGATTGTCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGCTGGACCGCTCTGGCATTGCTGCAAGCATTGGTCTGCCCATTGCGAATGGGTCATCTCCTGCTCAACAGGCTATTATGCCTATTGGTAATCCAGGTATAGTACCAGCAGTTGCACCAGCTGTCCCAACACAAATTATGCCTATCCCAGTGACTGAACCTGTTGGAAACCCCAGTGAGTGTTTACTGTTGAAGAACATGTTTGATCCAAACACTGAGACCGAACCAGATTTTGATCTAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCCAAATATGGACGAGTGAAGCATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACAGTGGAAGCAGCAAGTGCTGCTCAACGTGCAATGCACACAAGGTGGTTTGCAGGCAGAATGATATCTGCTATCTATATGCTACCTCAGATGTATGAAACCAAATTTAAAGGTGACGCTTGA | 1650 | 0.4715 | MDFDEYDYLEKTVEEQEDHDSSRKKKESERSYRKREEIDEGIEETKSKRSRGDEENGSKKDKDREERDRERRRDRDRDGERSSRDRDRDRDREKEREKGRERREKDKEREKREKEKEKEKERERERREREREREERERSRRSRSRSERERERERDFDTRDSRRFRDKKEAAEPEADPERDQRTVFAYQMPLKASERDAYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEIVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLSLNAQSRALLMQKLDRSGIAASIGLPIANGSSPAQQAIMPIGNPGIVPAVAPAVPTQIMPIPVTEPVGNPSECLLLKNMFDPNTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEAASAAQRAMHTRWFAGRMISAIYMLPQMYETKFKGDA* | 550 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso6g1254 | 549 | CDD | RRM2_RBM23_RBM39 | 286 | 358 | - | - | |
Gso6g1254 | 549 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 182 | 259 | IPR000504 | GO:0003723 | |
Gso6g1254 | 549 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 377 | 473 | IPR029123 | - | |
Gso6g1254 | 549 | CDD | RRM3_RBM39_like | 454 | 536 | - | - | |
Gso6g1254 | 549 | Gene3D | - | 110 | 270 | IPR012677 | - | |
Gso6g1254 | 549 | SUPERFAMILY | RNA-binding domain, RBD | 452 | 535 | IPR035979 | GO:0003676 | |
Gso6g1254 | 549 | Gene3D | - | 280 | 376 | IPR012677 | - | |
Gso6g1254 | 549 | SUPERFAMILY | RNA-binding domain, RBD | 175 | 263 | IPR035979 | GO:0003676 | |
Gso6g1254 | 549 | MobiDBLite | consensus disorder prediction | 12 | 181 | - | - | |
Gso6g1254 | 549 | Gene3D | - | 451 | 548 | IPR012677 | - | |
Gso6g1254 | 549 | Coils | Coil | 98 | 149 | - | - | |
Gso6g1254 | 549 | TIGRFAM | SF-CC1: splicing factor, CC1-like family | 66 | 545 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Gso6g1254 | 549 | SMART | rrm2_1 | 461 | 534 | IPR003954 | GO:0003676 | |
Gso6g1254 | 549 | CDD | RRM1_RBM39_like | 183 | 255 | - | - | |
Gso6g1254 | 549 | SMART | rrm1_1 | 285 | 358 | IPR000504 | GO:0003723 | |
Gso6g1254 | 549 | SMART | rrm1_1 | 456 | 534 | IPR000504 | GO:0003723 | |
Gso6g1254 | 549 | SMART | rrm1_1 | 183 | 255 | IPR000504 | GO:0003723 | |
Gso6g1254 | 549 | MobiDBLite | consensus disorder prediction | 1 | 182 | - | - | |
Gso6g1254 | 549 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 284 | 362 | IPR000504 | GO:0003723 | |
Gso6g1254 | 549 | PANTHER | CC1-LIKE SPLICING FACTOR | 1 | 548 | - | - | |
Gso6g1254 | 549 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 460 | 538 | IPR000504 | GO:0003723 | |
Gso6g1254 | 549 | SUPERFAMILY | RNA-binding domain, RBD | 283 | 361 | IPR035979 | GO:0003676 | |
Gso6g1254 | 549 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 286 | 356 | IPR000504 | GO:0003723 | |
Gso6g1254 | 549 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 190 | 251 | IPR000504 | GO:0003723 | |
Gso6g1254 | 549 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 478 | 531 | IPR000504 | GO:0003723 | |
Gso6g1254 | 549 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 548 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso6g1254 | Gso-Chr6 | 12223637 | 12230938 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso6g1254 | 256 | 357 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 35.922 | 3.50e-08 | 54.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso6g1254 | K13091 | - | gmx:100802446 | 755.747 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso5g1595 | 5 | 39241147 | 39249194 | Gso6g1254 | 6 | 12223637 | 12230938 | PCT | |
Gso8g1220 | 8 | 11152317 | 11159954 | Gso6g1254 | 6 | 12223637 | 12230938 | PCT | |
Gso6g1254 | 6 | 12223637 | 12230938 | Gso5g1595 | 5 | 39241147 | 39249194 | PCT | |
Gso6g1254 | 6 | 12223637 | 12230938 | Gso8g1220 | 8 | 11152317 | 11159954 | PCT |