Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1250 ATGAACAACCCTACATTGTCAAGGCTATTTCCGGGTTTGAATAGGGAGAGGGAGATGTCTGCTATGGTCTCAGCTTTGACCCACGTGGTCTCCGGAGAGGTGCCAATAACCGGTGATTCTTCTTCTTCTTCTTCTTTGGTTCTTCATCATCAACCTCATGATGATACTGTTATTGTTACACCAACCATGCCTTCTTCTTCTTCTTCATCTACTTATGTTGTTGGCACCTCTTCTCTCAAGAGAAGTAGGGAAAATGATACATATACATCATCCTTATTCTCACATCCACCTTCATCATCCCCTGCTATGCCAACAAGGGCAGAATATGCAACAAGGGAAATGGGAAATTCTGTGTACGAATACAGAACAACAACAGAGAATGCAACAAGGGATGAAGGAAGGAGAAAATACAGAGGGGTGAGGCAGAGGCCGTGGGGGAAATGGGCAGCAGAGATAAGAGACCCATTCAAAGCGGCAAGAGTATGGTTAGGAACATTTGACACAGCAGAGGCAGCAGCTAGAGCATACGATGAAGCTGCTCTTCGTTTCAGAGGCAACAAAGCCAAACTCAATTTTCCTGAGAATGTCACTCTCCGACAACCTCAATTCACTGTTTCCAATTCTCCATCTTCTCTTGTATCTATTACAACATCAACAGACCCAGTTGTTCACAGTACTCGACCTCTTCTTCTTCCTTCTCAGGCTTCAACTGCGACCAATGTTTACGAGTATTTTCAACTCTCGGGCTTCCCCACCAACACCAACCTTTATGATGGTAATAGGATGTTTGTGACGTCTAATGCCATGGCTTCTCATCATCTTCAATCTTCGTCTTCGTTGTTGTCGTCTTCTTCTTCTGCGTTTGTTTCTTCTGTAACTTCTCAGGACACTTCACTTTCTTCGTTGTATTCTGGCCAGTTGCCACCATGGTCAAAGGTTTCTGGTCACAGCTCGTCTTCCTCCGGATGA 969 0.4469 MNNPTLSRLFPGLNREREMSAMVSALTHVVSGEVPITGDSSSSSSLVLHHQPHDDTVIVTPTMPSSSSSSTYVVGTSSLKRSRENDTYTSSLFSHPPSSSPAMPTRAEYATREMGNSVYEYRTTTENATRDEGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVTLRQPQFTVSNSPSSLVSITTSTDPVVHSTRPLLLPSQASTATNVYEYFQLSGFPTNTNLYDGNRMFVTSNAMASHHLQSSSSLLSSSSSAFVSSVTSQDTSLSSLYSGQLPPWSKVSGHSSSSSG* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1250 322 CDD AP2 136 195 IPR001471 GO:0003700|GO:0006355
Gso6g1250 322 Gene3D AP2/ERF domain 135 195 IPR036955 GO:0003700|GO:0006355
Gso6g1250 322 SUPERFAMILY DNA-binding domain 136 194 IPR016177 GO:0003677
Gso6g1250 322 MobiDBLite consensus disorder prediction 60 104 - -
Gso6g1250 322 Pfam AP2 domain 136 185 IPR001471 GO:0003700|GO:0006355
Gso6g1250 322 PANTHER DNA-BINDING DOMAIN 14 313 IPR044808 GO:0003700|GO:0009873
Gso6g1250 322 MobiDBLite consensus disorder prediction 299 322 - -
Gso6g1250 322 ProSiteProfiles AP2/ERF domain profile. 136 193 IPR001471 GO:0003700|GO:0006355
Gso6g1250 322 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 14 313 - -
Gso6g1250 322 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700|GO:0006355
Gso6g1250 322 PRINTS Ethylene responsive element binding protein signature 159 175 IPR001471 GO:0003700|GO:0006355
Gso6g1250 322 SMART rav1_2 136 199 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1250 Gso-Chr6 12194914 12197097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1250 130 198 AP2-EREBP Transcription Factor Family AT5G61890 79.167 1.07e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso6g1250 AP2 3.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1250 - - gmx:100796247 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1820 4 48437899 48439474 Gso6g1250 6 12194914 12197097 GST