Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1248 ATGGGTTGCGTTTGTGGCAAGTTTTCTCCCCCTCGAGAAGAGAGGCCGAGACCACCGCAAGTGAAGAGAGTTGCAAGCAAAGAGGGTTCGAGAACTACGCGTTCCTCTAAGCATGTGGGAGAGGGTGTGAAGAGGGAGACTCAGACACAGAGAGTGAGTGTGAGTGTTAATAAGGATTCAACTGCTAATGATGGTGGTGTTGTAGAAGGAGAAAAGGGAAAAACGGTTGCTAAAAAGGGCAAGACTACTAAGGATTTGGATGTTAAGGAGGAGAAGATGGCCGAATATGGATTTGTGGACGGGTGGCCAAAGTGGTTGCTCGATAATATCCCCGCAAATGTTTTGGCTAAAATTGTTCCAAAGAGCGCTGATTCCTTTGAAAAACTTGCCAAGATAGGACGTGGAACATATAGTAATGTGTACAAAGCAAGAGAAAAGGGCACGGGAAAGATTGTTGCTTTGAAGAAGGTAAGGTTTGACACGTCGGATTCTGAGAGTATCAAGTTTATGGCAAGAGAGATCATGATACTGCAGATGCTGGATCATCCCAATGTGATCAAACTTAAAGGACTGGCAACATCAAGGATGCAGTATAGTCTTTATCTAGTTTTTGACTTCATGCAGTCTGATCTCACCCGCATTATCTCCCGACCCGGGGAGAAACTCACCGAAGCACAGATCAAGTGTTATATGCAGCAGCTCCTTTCTGGCCTGCAGCACTGTCATGAGACGGGAATCATGCACCGAGATATCAAGGCTTCTAACTTATTAATAGACAGAAGAGGGGTGCTGAAAATTGCAGATTTTGGACTTGCAACTTCCATTGAAGCTGAAAGGCCACTAACAAATAGAGTGGTGACACTTTGGTATAGGGCTCCAGAACTTCTTTTGGGTTCAACCGATTATGGATTCAGCATTGATCTCTGGAGTGCAGGGTGCCTGCTGGCTGAGATGCTTGTTGGAAGACCTATTATGCCTGGCAGGACAGAGGTTGAACAGATTCATATGATCTTCAAACTTTGTGGTTCTCCTTCAGAGGATTATTTTAAAAAACTGAAGCTAACAACAAGTTATCGGCCTCCAAACCATTACAAATTAAGTTTCGAAGAAAACTTTCAGAATTTTCCTTCCTCTTCCCAGGGTCTCTTGGCTACATTTCTTGATCTCAATCCTGCCCATCGTGGCAGTGCTGCCTCTGCTCTCCAAAGTGAATTCTTCAAATGTAGTCCTTTAGCATGTGACCCTTCAGCTTTGCCAGATATCCCCAAAGACGAGGATGAACGCTTGCAAACTAAGAGAGGCAAAAGGCAAAGGGTTTCCAAAAGGGGGCAATCATCTCAAACAAGTAGAAGTGATGCTAGTCAGTCAGAAAAGGTCCAAATTACTGCTGAACAACCCCGTGAAGATACAGAATCGTCTAAAGAGAAGAATATGGAACAACACAAGCAGGGTCAAGAAACTGTTCATAGTGCTAGCAGCACATCATCCGGTTCAAGACTCTTTATGACCGAAGGGAGCACGAATGCATCTATGTCCCCAGTTTTTCTCTCTAGTGGCAGTGTCCGAAAATCCCCCAAAATAGAGGGCCACCCTAATGCTCTTAGGAACATAGAGAACTATAGTGCTCTCTTACAACAGACTTCTGTACTTGATATGATCAACCGCAATGAAGGCAAGGAATTTCCTCAGCTTCTCAAATCCTTCTCCGCGTTGGATTTTCGACTTGATTCTGACAAGCTATCATAA 1746 0.4433 MGCVCGKFSPPREERPRPPQVKRVASKEGSRTTRSSKHVGEGVKRETQTQRVSVSVNKDSTANDGGVVEGEKGKTVAKKGKTTKDLDVKEEKMAEYGFVDGWPKWLLDNIPANVLAKIVPKSADSFEKLAKIGRGTYSNVYKAREKGTGKIVALKKVRFDTSDSESIKFMAREIMILQMLDHPNVIKLKGLATSRMQYSLYLVFDFMQSDLTRIISRPGEKLTEAQIKCYMQQLLSGLQHCHETGIMHRDIKASNLLIDRRGVLKIADFGLATSIEAERPLTNRVVTLWYRAPELLLGSTDYGFSIDLWSAGCLLAEMLVGRPIMPGRTEVEQIHMIFKLCGSPSEDYFKKLKLTTSYRPPNHYKLSFEENFQNFPSSSQGLLATFLDLNPAHRGSAASALQSEFFKCSPLACDPSALPDIPKDEDERLQTKRGKRQRVSKRGQSSQTSRSDASQSEKVQITAEQPREDTESSKEKNMEQHKQGQETVHSASSTSSGSRLFMTEGSTNASMSPVFLSSGSVRKSPKIEGHPNALRNIENYSALLQQTSVLDMINRNEGKEFPQLLKSFSALDFRLDSDKLS* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1248 581 MobiDBLite consensus disorder prediction 441 461 - -
Gso6g1248 581 MobiDBLite consensus disorder prediction 462 483 - -
Gso6g1248 581 MobiDBLite consensus disorder prediction 46 62 - -
Gso6g1248 581 ProSitePatterns Protein kinases ATP-binding region signature. 132 155 IPR017441 GO:0005524
Gso6g1248 581 SUPERFAMILY Protein kinase-like (PK-like) 119 409 IPR011009 -
Gso6g1248 581 PANTHER CYCLIN-DEPENDENT KINASE 72 529 - -
Gso6g1248 581 MobiDBLite consensus disorder prediction 484 511 - -
Gso6g1248 581 PANTHER CELL DIVISION PROTEIN KINASE 72 529 - -
Gso6g1248 581 MobiDBLite consensus disorder prediction 416 511 - -
Gso6g1248 581 CDD STKc_CDK9_like 126 406 - -
Gso6g1248 581 Gene3D Transferase(Phosphotransferase) domain 1 209 491 - -
Gso6g1248 581 MobiDBLite consensus disorder prediction 10 45 - -
Gso6g1248 581 ProSiteProfiles Protein kinase domain profile. 126 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1248 581 Gene3D Phosphorylase Kinase; domain 1 114 208 - -
Gso6g1248 581 MobiDBLite consensus disorder prediction 1 74 - -
Gso6g1248 581 MobiDBLite consensus disorder prediction 419 433 - -
Gso6g1248 581 SMART serkin_6 126 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1248 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Gso6g1248 581 Pfam Protein kinase domain 126 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1248 Gso-Chr6 12156562 12162693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1248 121 460 Core Cell Cycle Gene Families AT5G10270 45.278 3.68e-97 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso6g1248 Pkinase 9.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1248 K08819 - gmx:100782603 961.829