Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1246 ATGAAAGCTCTGTACAGAAGCTCTCTCTTGCTCCTCTTCTTCCTCTCCGTCTGTTCTGCATCTTCTTCTTCGGTTCCCACTCTGCAACTCCTAAGCTTCAAAAACTCTCTCCCGAACCCAACCCTGCTCCCGAACTGGCTCCCGAACCAAAGCCCATGCTCATTCACCGGCATCACCTGCAACGACACCCAGCACCTCACTTCCATAGACCTCTCCGGCGTCCCTCTCACCACAAACCTCACCGTCATCGCCACCTTCCTCCTCACCCTCGACAACCTCCAGTCACTCTCCTTAAAATCCACCAACCTCTCCGGCCCCGCCGCCATGCCTCCTCCTCTCTCCCACTCCAAGTGCGCCTCCACATTAACCTCCCTAGATCTATCACAAAACGCCCTCTCCGGTTCCCTCAACGACATGTCGTTTCTCTCCTCCTGCTCCAACCTCCAATCCCTCAATCTCTCCAGCAACCTTCTTGAATTCGACTCCTCTCACTGGAAGCTCCACCTCCTCGTCGCCGACTTTTCCTACAACAAGATTTCCGGCCCCGGTATCCTCCCCTGGCTTCTCAACCCTGAAATCGAACACCTCGCTCTGAAAGGCAACAAAGTCACCGGCGAAACCGACTTCTCCGGTTCCAATTCTCTCCAGTTTTTAGACCTTTCTTCCAACAACTTTTCTGTTACGCTTCCTACTTTCGGCGAGTGTTCTTCGCTTGAGTATTTGGACCTCTCCGCCAACAAGTACTTCGGCGACATTGCTCGCACTCTCTCGCCTTGCAAGAGCCTCGTTTACTTAAACTTCTCCAGCAACCAGTTCTCCGGTCCGGTTCCTTCCCTTCCCTCCGGTTCGCTACAGTTCGTGTACCTTGCTTCAAACCACTTCCACGGCCAGATTCCTCTCCCCCTCGCCGACCTCTGCTCCACTCTCCTCCAGCTCGATCTCTCCTCCAACAACCTCTCAGGCGCTCTCCCCGAAGCCTTCGGCGCTTGCACTTCTCTTCAGTCCTTCGACATCTCCAGCAACCTCTTCGCCGGTGCGCTGCCTATGGACGTTCTCACGCAAATGAAAAGCCTCAAAGAGCTCGCGGTGGCGTTCAACGCGTTCCTTGGTCCCCTTCCGGAGTCTCTGACGAAGCTCTCCACTTTAGAGTCGCTGGATCTTAGCTCCAACAACTTCAGCGGCTCAATCCCGACAACGCTTTGCGGTGGTGACGCTGGGAATAATAATATTCTGAAGGAACTTTACCTGCAGAACAACCGGTTCACGGGTTTTATTCCACCCACGCTCAGCAACTGTTCAAACCTCGTTGCTTTGGACTTGAGTTTCAACTTCCTCACGGGAACTATTCCTCCAAGCCTAGGGTCTCTTTCCAAGCTTAAAGACTTGATCATCTGGCTCAACCAGCTCCATGGAGAAATACCGCAGGAGCTCATGTATCTGAAAAGCCTCGAGAATTTGATCCTGGATTTCAACGACTTGACTGGGAACATTCCCTCTGGGCTTGTTAACTGCACCAAGCTGAACTGGATCTCCCTCTCCAACAACAGGCTCAGCGGCGAGATTCCGCGGTGGATTGGGAAGCTTTCTAATCTCGCCATACTTAAGCTCAGTAATAACTCTTTCTCCGGCCGGATTCCGCCGGAGCTCGGCGATTGTACTAGTTTAATATGGTTGGATCTGAATACTAATATGCTCACCGGGCCCATTCCGCCGGAGCTGTTCAAGCAGTCGGGGAAGATCGCGGTGAATTTCATCAGTGGGAAGACGTATGTGTATATAAAGAACGATGGGAGCAAAGAGTGTCATGGTGCGGGGAACTTGCTGGAGTTTGCCGGGATCAGTCAGCAGCAGTTGAACAGGATTTCGACGAGGAACCCGTGCAATTTCACTAGGGTTTATGGAGGTAAGTTGCAGCCAACGTTTAACCATAATGGTTCTATGATATTTTTGGATATCTCGCACAACATGTTGTCAGGGAGTATTCCCAAGGAGATTGGGGCCATGTACTATTTGTACATTCTCAATTTGGGTCATAATAATGTGTCTGGGAGCATTCCTCAAGAGCTTGGGAAGATGAAGAATCTCAACATCCTTGATCTCTCAAGTAATAGACTGGAGGGGCAAATTCCTCAGAGTCTCACGGGGCTTTCCTTGCTCACTGAGATTGACCTGTCGAATAACTTGCTTACGGGGACGATTCCTGAGTCGGGTCAATTTGATACTTTCCCTGCGGCGAGATTTCAGAACAACTCTGGTCTCTGTGGAGTTCCTCTCGGCCCATGTGGTTCGGACCCGGCGAATAACGGGAATGCGCAACATATGAAGTCTCACAGGAGGCAGGCTTCTCTGGTGGGGAGTGTGGCCATGGGTTTGTTGTTTTCCCTCTTCTGCGTCTTTGGTTTGATCATTATTGCCATTGAGACCAGGAAGAGGAGGAAGAAGAAGGAGGCTGCTCTTGAAGCCTATGCTGATGGTAATTTGCATTCGGGTCCTGCCAACGTGAGCTGGAAGCACACCAGTACCCGGGAAGCGCTTAGCATAAACCTTGCAACGTTTAAGAGGCCGCTCAGGAGGCTTACTTTTGCGGACCTTCTTGACGCTACCAATGGCTTTCACAATGATAGTCTCATTGGCTCTGGTGGGTTTGGGGATGTTTACAAGGCTCAGTTGAAGGATGGAAGTGTTGTGGCTATCAAGAAGCTGATTCATGTCAGCGGCCAAGGGGACAGGGAATTCACTGCTGAAATGGAGACCATTGGGAAGATCAAGCACAGGAACCTTGTTCCTCTGTTGGGATACTGCAAGGTTGGGGAAGAGAGGCTCTTGGTTTATGAGTACATGAAATATGGAAGCTTAGAGGATGTTCTTCATGATCCGAAGAAAGCTGGGATCAAGTTGAATTGGTCGATTAGGAGGAAAATTGCTATTGGAGCTGCTAGGGGATTGTCTTTTCTTCACCACAATTGTAGCCCCCACATCATTCATAGAGACATGAAGTCAAGCAATGTGTTACTTGATGAAAACCTGGAAGCTAGAGTCTCTGATTTTGGAATGGCTAGGCATATGAGTGCTATGGATACACATTTGAGTGTGAGCACACTGGCAGGCACACCAGGGTATGTTCCTCCGGAGTACTATGAGAGCTTCAGATGCTCTACCAAAGGTGATGTCTACAGTTATGGTGTGGTTTTGTTGGAGCTGCTAACTGGGAAAAGGCCAACAGATTCGGCTGATTTTGGTGATAATAATCTTGTTGGATGGGTTAAACAACATGCCAAGCTGAAAATAAGTGATATTTTTGACCCAGAGCTCATGAAGGAAGACCCCAATTTGGAGATGGAGCTTTTGCAGCACCTGAAGATTGCAGTTTCCTGTTTGGATGATCGGCATTGGAGACGTCCAACGATGATTCAAGTGTTGACAATGTTCAAGGAGATTCAGGCAGGATCTGGGATTGATTCTCAGTCAACCATAGCCAATGAAGATGACAGTTTCAATGCAGTTGAAATGGTGGAGATGAGCATTAAAGAAACCCCTGAATTGAGCAAGCATTAG 3555 0.4965 MKALYRSSLLLLFFLSVCSASSSSVPTLQLLSFKNSLPNPTLLPNWLPNQSPCSFTGITCNDTQHLTSIDLSGVPLTTNLTVIATFLLTLDNLQSLSLKSTNLSGPAAMPPPLSHSKCASTLTSLDLSQNALSGSLNDMSFLSSCSNLQSLNLSSNLLEFDSSHWKLHLLVADFSYNKISGPGILPWLLNPEIEHLALKGNKVTGETDFSGSNSLQFLDLSSNNFSVTLPTFGECSSLEYLDLSANKYFGDIARTLSPCKSLVYLNFSSNQFSGPVPSLPSGSLQFVYLASNHFHGQIPLPLADLCSTLLQLDLSSNNLSGALPEAFGACTSLQSFDISSNLFAGALPMDVLTQMKSLKELAVAFNAFLGPLPESLTKLSTLESLDLSSNNFSGSIPTTLCGGDAGNNNILKELYLQNNRFTGFIPPTLSNCSNLVALDLSFNFLTGTIPPSLGSLSKLKDLIIWLNQLHGEIPQELMYLKSLENLILDFNDLTGNIPSGLVNCTKLNWISLSNNRLSGEIPRWIGKLSNLAILKLSNNSFSGRIPPELGDCTSLIWLDLNTNMLTGPIPPELFKQSGKIAVNFISGKTYVYIKNDGSKECHGAGNLLEFAGISQQQLNRISTRNPCNFTRVYGGKLQPTFNHNGSMIFLDISHNMLSGSIPKEIGAMYYLYILNLGHNNVSGSIPQELGKMKNLNILDLSSNRLEGQIPQSLTGLSLLTEIDLSNNLLTGTIPESGQFDTFPAARFQNNSGLCGVPLGPCGSDPANNGNAQHMKSHRRQASLVGSVAMGLLFSLFCVFGLIIIAIETRKRRKKKEAALEAYADGNLHSGPANVSWKHTSTREALSINLATFKRPLRRLTFADLLDATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDPKKAGIKLNWSIRRKIAIGAARGLSFLHHNCSPHIIHRDMKSSNVLLDENLEARVSDFGMARHMSAMDTHLSVSTLAGTPGYVPPEYYESFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDIFDPELMKEDPNLEMELLQHLKIAVSCLDDRHWRRPTMIQVLTMFKEIQAGSGIDSQSTIANEDDSFNAVEMVEMSIKETPELSKH* 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1246 1184 Pfam Leucine rich repeat 671 729 IPR001611 GO:0005515
Gso6g1246 1184 SMART serkin_6 871 1143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1246 1184 CDD STKc_IRAK 877 1146 - -
Gso6g1246 1184 Gene3D Phosphorylase Kinase; domain 1 832 946 - -
Gso6g1246 1184 SUPERFAMILY L domain-like 171 398 - -
Gso6g1246 1184 Gene3D Ribonuclease Inhibitor 30 761 IPR032675 -
Gso6g1246 1184 Gene3D Transferase(Phosphotransferase) domain 1 947 1148 - -
Gso6g1246 1184 SUPERFAMILY Protein kinase-like (PK-like) 852 1143 IPR011009 -
Gso6g1246 1184 Pfam Brassinosteroid receptor island domain 578 642 IPR045381 -
Gso6g1246 1184 SMART LRR_typ_2 528 552 IPR003591 -
Gso6g1246 1184 SMART LRR_typ_2 480 504 IPR003591 -
Gso6g1246 1184 SMART LRR_typ_2 305 329 IPR003591 -
Gso6g1246 1184 SMART LRR_typ_2 716 741 IPR003591 -
Gso6g1246 1184 SMART LRR_typ_2 692 715 IPR003591 -
Gso6g1246 1184 SMART LRR_typ_2 379 403 IPR003591 -
Gso6g1246 1184 Pfam Leucine rich repeat N-terminal domain 29 61 IPR013210 -
Gso6g1246 1184 Pfam Protein kinase domain 871 1140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1246 1184 ProSitePatterns Serine/Threonine protein kinases active-site signature. 993 1005 IPR008271 GO:0004672|GO:0006468
Gso6g1246 1184 Gene3D - 583 643 - -
Gso6g1246 1184 SUPERFAMILY L domain-like 373 747 - -
Gso6g1246 1184 PANTHER SYSTEMIN RECEPTOR SR160 14 1158 - -
Gso6g1246 1184 SUPERFAMILY L domain-like 50 230 - -
Gso6g1246 1184 Pfam Leucine Rich repeat 379 394 IPR001611 GO:0005515
Gso6g1246 1184 ProSitePatterns Protein kinases ATP-binding region signature. 877 900 IPR017441 GO:0005524
Gso6g1246 1184 Pfam Leucine Rich Repeat 411 432 IPR001611 GO:0005515
Gso6g1246 1184 Pfam Leucine Rich Repeat 434 456 IPR001611 GO:0005515
Gso6g1246 1184 ProSiteProfiles Protein kinase domain profile. 871 1146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1246 1184 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 1158 - -
Gso6g1246 1184 PRINTS Leucine-rich repeat signature 122 135 - -
Gso6g1246 1184 PRINTS Leucine-rich repeat signature 692 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1246 Gso-Chr6 12127392 12131526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1246 29 1180 Receptor kinase-like Gene Family AT4G39400 69.007 0.0 1544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gso6g1246 Pkinase 8.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1246 K13415 - gmx:100799772 2247.24