Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1239 ATGGACTTGGCCGCGAAGCTTCACCGTTTAGACCTCACCGGCGTGGTCATTTTGGACGCACGAAAGCCCTCCGTACTCCGCCACCTTCCGCCACGCATCCTCACCAAAACAAACACCAATTTAATCTACACGAACCGGTTCTCGGGCCCATCGAGGCCCAATTCCGCTTCCTCTTCCACGATAACCGTTGAGGACGACATCGAGTCTCTCTTCTCCGAGACGAATTCGGAGGAGGAGAGGCGCTCGAGGAAGCAACCGAGCAGTGGCGCGTCGGGGATTTCCTCTGGAGTGAAGCTCGAGAACGTGGGGAAAGCCTACAAGGGCGTGACGGTGCTGAAGGACGTGAGTTGGGAGGTGAAGAAAGGGGAGAAGGTGGGTTTAGTCGGCGTGAACGGTGCGGGGAAGACGACGCAGATGAGGATAATCGCGGGGCTCGAGGAGCCGGATTTCGGGAACGTGGTGAAGGCAAAGGAGAACATGAGAATCGCGTTTCTGAACCAGGAGTTCGAGGTAGCGCTGAGCAGGACTGTGAGGGAGGAGTTCACCAGCGCATTCAAGGAGGAGATGGAGGTGGCAGGGAAGCTGGAGAAGGTGCAGAAGGCGCTCGAGGGTGCTGTTAATGATTTGGAGCTCATGGGGAGGCTTTTGGATGAGTTCGATTTGCTTCAGAGGAGGGCGCAGAATGTGAACCTTGATGAGGTTGATGCCAAGATTAGTAAGTTGATGCCTGAGCTTGGTTTTGCTCCGGAGGATTCTGATAGATTGGTCGCGTCTTTCAGTGGAGGGTGGCAGATGAGGATGTGTCTCGGCAAGATTCTACTTCAGGAGCCCGATTTGTTGCTGTTAGATGAGCCTACAAATCACCTTGATCTTGACACCATTGAGTGGCTTGAGGACTATCTTAACCAGCAGGATGTGCCAATGGTTATCATTTCCCATGATCGAGCTTTTCTTGATCAGCTGTGTACAAAAATTGTGGAAACTGACATGGGTGTGTCCAGGACGTTTGAGGGAAATTATTCTCAGTATGTAATTTCAAAAGCAGCTTGGATTGAAGCACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAGCATACAAGAGACTTGATAAGTAGATTAGGTGCTGGAGCAAATTCTGGCCGTGCTTCTTCTGCTGAGAAGAAGCTGGAGAGACTTCAGGAAGAGGAACTAGTGGAGAAGCCATTTGAACGGAAACAAATGAAAATCAGGTTCCCTGAGCGTGGAAGGAGTGGAAGATCTGTTGTAGCAATTCAGAACTTGGAATTTGGCTTTGAGGATAAGACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTACTGAAATTGATTATGGGTTTGGAAAAGCCAACTGGGGGTGAAGTTTTGCTCGGGGAGCATAATGTGTTACCTAACTATTTTGAGCAGAATCAGGCTGAGGCACTTGATCTGGAAAAAACCGTGCTTGAGACAGTAGAGGAAGCTGCAGAGGACTGGAGGATTGATGATATTAAAGGGCTCCTTGGGCGTTGTAATTTTAAAGCTGATATGCTTGACCGAAAAGTTTCACTATTGAGTGGCGGTGAGAAGGCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTGTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGGAGGCAATAAATGAATACGAGGGCACTGTTATCACAGTATCTCATGACCGATACTTTATAAAGCAAATAGTTAATAGAGTGATAGAAATTAAAGATGGCACTATACAGGATTATGCAGGTGATTACGATTATTATTTAGAGAAGAATCTTGATGCTAGGGAAAGAGAACTTGAACGCGAGGCAGAGCTTGATAGCAAAGCTCCTAAAGTGAAAGCCAAATCTAAGATGTCCAAGGCTGAGAAAGAAGCACGGAAGAAACAAAAGATGCAGGCCTTTCAGGCAGCAAAACAGAAGTCTAAAGGCGTGAAAAATGCGAAGAGATGGAATTGA 2076 0.4716 MDLAAKLHRLDLTGVVILDARKPSVLRHLPPRILTKTNTNLIYTNRFSGPSRPNSASSSTITVEDDIESLFSETNSEEERRSRKQPSSGASGISSGVKLENVGKAYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDFGNVVKAKENMRIAFLNQEFEVALSRTVREEFTSAFKEEMEVAGKLEKVQKALEGAVNDLELMGRLLDEFDLLQRRAQNVNLDEVDAKISKLMPELGFAPEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEDYLNQQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVISKAAWIEAQYAAWEKQQKEIEHTRDLISRLGAGANSGRASSAEKKLERLQEEELVEKPFERKQMKIRFPERGRSGRSVVAIQNLEFGFEDKTLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPTGGEVLLGEHNVLPNYFEQNQAEALDLEKTVLETVEEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYEGTVITVSHDRYFIKQIVNRVIEIKDGTIQDYAGDYDYYLEKNLDARERELEREAELDSKAPKVKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGVKNAKRWN* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1239 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 344 IPR027417 -
Gso6g1239 691 SMART AAA_5 448 616 IPR003593 -
Gso6g1239 691 SMART AAA_5 121 336 IPR003593 -
Gso6g1239 691 Coils Coil 651 680 - -
Gso6g1239 691 CDD ABCF_EF-3 97 327 - -
Gso6g1239 691 Pfam ABC transporter 112 287 IPR003439 GO:0005524
Gso6g1239 691 Pfam ABC transporter 440 571 IPR003439 GO:0005524
Gso6g1239 691 ProSitePatterns ABC transporters family signature. 543 557 IPR017871 GO:0005524
Gso6g1239 691 PANTHER ABC TRANSPORTER F FAMILY MEMBER 5 48 681 - -
Gso6g1239 691 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 97 355 IPR003439 GO:0005524
Gso6g1239 691 CDD ABCF_EF-3 426 616 - -
Gso6g1239 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 630 IPR027417 -
Gso6g1239 691 MobiDBLite consensus disorder prediction 71 95 - -
Gso6g1239 691 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 424 639 IPR003439 GO:0005524
Gso6g1239 691 Gene3D - 94 378 IPR027417 -
Gso6g1239 691 ProSitePatterns ABC transporters family signature. 259 273 IPR017871 GO:0005524
Gso6g1239 691 MobiDBLite consensus disorder prediction 641 671 - -
Gso6g1239 691 Gene3D - 386 654 IPR027417 -
Gso6g1239 691 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 48 681 - -
Gso6g1239 691 Pfam ABC transporter 326 413 IPR032781 -
Gso6g1239 691 MobiDBLite consensus disorder prediction 641 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1239 Gso-Chr6 12051383 12056281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1239 421 641 Calmodulin-binding Proteins AT2G36910 25.506 2.40e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1239 - - gmx:100797121 1256.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1831 4 48582712 48587847 Gso6g1239 6 12051383 12056281 GST