Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1227 ATGAATTCCCCACCCAACTTCTTGTCCCTGTTGCTGTCTCTTCTCTTGCTCACTATCTCTACTCCTTCCTCCTCCCTCCCGGAGCTCAGATCTCTCCTCGAATTCAAGAAAGGCATAACCCGAGATCCGGAGAAGCTTCTAGACTCATGGGCCCCCACCACCGTCGCCGACTCCACCTCCACGTGTCCTTCCTCCTGGCAGGGCGTCTTCTGCGACGAGGAGTCCGGCAACGTCACCGGAATCGTCCTCGATCGCCTCAACCTCGGCGGCGAGCTCAAGTTCCACACTCTTCTCGACCTCAAGATGCTCAAGAACCTCTCGCTCTCCGGCAACGCCTTCAGCGGCCGCCTACCCCCCTCGCTAGGGTCACTTTCGTCACTCCAGCATTTGGATCTTTCTCAGAACAAGTTCTACGGCCCCATCCCGGCTCGGATCAACGACCTGTGGGGCCTCAATTACCTCAATTTGTCCAACAACAACTTCAAGGGCGGTTTCCCAAGCGGCCTCAACAACCTTCAGCAGCTTCGCGTTCTCGATTTGCATGCAAACCAACTCTGGGCCGAAATTGGGGACGTGCTCTCCACGCTCCGGAATGTGGAGCGCGTGGATTTGAGCCTCAACCAGTTCTTCGGTGGACTCTCCCTAACGGTTGAGAATGTTTCCGGCTTGGCCAACACCGTGCATTTTCTTAACCTGAGTCACAACAACTTGAACGGTCGTTTCTTTACAAACTCCACCATTACCCTGTTTCGTAATTTGCAGGTTTTGGACTTGAGTGGTAACTCCATCACTGGGGAGCTTCCTTCTTTTGGTTCCTTGCTGGCGCTTCGCGTTCTCAGGCTTCCTCGGAATCAGTTGTTTGGTTCTTTGCCGGAGGAGCTCTTGCAGACTTCAATGCCGTTGGAAGAATTGGATCTTAGCTTCAATGGGTTTACTGGCTCAATCGGTGTAATCAACTCTACAACTTTAAATATTTTGAATCTTTCATCCAATAGTTTATCAGGCTCCTTGCCAACTTCTTTGAGAAGATGTACAGTCATTGACTTGAGCAGGAATATGTTATCTGGTGACATTTCTGTTATACAGAACTGGGAAGCCCCATTGGAGGTCATTGTTCTGAGTTCAAACAAGCTGTCAGGATCCTTGCCTTCTATTTTAGAAACCTATTCAAAATTGTCTACTGTTGACTTAAGTTTGAATGAACTTAAGGGATCCATTCCACGAGGTTTAGTTGCTTCATCGTCAGTGACAAGACTAAATCTTTCTGGAAATCAATTTACAGGACCGCTTCTGCTTCAAAGTTCAGGAGCAAGTGAATTACTACTTATGCCTCCTTATCAACCAATGGAATATCTTGATGCATCTAATAACTCCTTAGAAGGTGTCTTACCTTCTGAAATAGGTAGGATGGGTGCGCTTAGACTGCTGAATCTGGCAAGGAATGGGTTTTCTGGACAGCTGCCAAATGAATTGAATAAACTTTTTTATTTGGAGTACCTCGATTTGTCTAACAACAATTTTACTGGGAATATTCCTGATAAGCTTTCATCCAGCTTAACTGCATTTAACATGTCCAATAACGATCTATCTGGCCATGTTCCTGAAAATTTGCGGCATTTCTCTCCTTCATCCTTTCGCCCTGGAAATGGAAAGCTAATGTTACCAAATGATTCTCCCGAGACTTCTTTGGTGCCTGATAACATTCCAGATAAGGGTAGACATCATAGTTCAAAGGGTAATATAAGGATAGCTATTATTCTTGCCTCTGTGGGTGCTGCTATTATGATTGCTTTTGTTTTATTGGCTTATCATCGAACACAATTAAAAGAATTTCATGGAAGAAGTGAGTTCACTGGTCAAAATACTAGAAGAGATGTTAAGTTAGGAGGACTTTCGAGGTCTTCCCTCTTCAAGTTCAATACAAACGTTCAACCCCCAACATCTTCATTGAGCTTTTCAAATGACCACCTGTTGACTTCCAATTCAAGGTCACTCTCTGCTGGACAGTCAGAGTTTATAACTGAAATTTCTGAGCATGGCTTAACTCAGGGAATGGTGGCTACTAGTTCAGCATCTTTAAATCCTAATTTGATGGATAACCCTCCCACTTCATCTGGAAGGAAGTCTTCTCCCGGTTCTCCATTGTCATCTTCACCCCGTTTTATAGAGGCTTGTGAAAAGCCAGTAATGTTGGATGTTTACTCACCAGATCGGTTGGCTGGGGAACTGTTTTTCCTGGATTCTTCCCTAGCATTCACTGCAGAGGAATTATCTCGAGCTCCAGCTGAAGTTCTTGGCAGAAGTAGCCATGGCACTTTATACAAAGCAACTCTGGACAGTGGTCATATGTTGACTGTAAAATGGTTACGGGTGGGATTGGTCAAACATAAAAAGGAATTTGCTAGAGAAGTTAAAAGGATCGGTTCTATGAGGCATCCAAACATTGTCCCATTACTAGCATACTATTGGGGGCCTAGGGAACAAGAGAGGCTTCTTTTAGCTGACCATATACATGGGGACAACTTGGCTCTTCATCTCTATGAGAGCACACCCCGGAGGTACTCCCCATTATCATTCAGCCAGAGAATAAGAGTTGCTGATGATGTTGCTCGATGTCTTCTATACCTTCATGATCGAGGACTTCCCCATGGAAATCTAAAGCCAACAAATATAGTGTTAGCAGGCCCTGATTTCAATGCTCGTCTTACTGACTATGGTCTGCACCGGCTGATGACGCCAGCTGGAATTGCAGAGCAGATACTAAATCTCGGGGCACTTGGATACCGTGCTCCAGAACTCGCTACTGCATCCAAACCAGTTCCATCCTTTAAGGCTGATGTGTATGCACTTGGTGTGGTCCTAATGGAATTGTTAACAAGAAAAAGTGCAGGTGACATAATATCGGGGCAATCGGGTGCTGTTGATCTTACAGATTGGGTTAGGCTGTGCGAGCGAGAAGGAAGGGTAAGGGACTGTATTGACAGAGACATTGCAGGTGGGGAAGAATCCAACAAAGAGATGGATGAACTGCTTGCAATATCTCTCAGGTGTATTCTCCCTGTAAATGAGAGGCCTAACATCAGACAAGTTTTTGACGATCTGTGTTCAATATCGGTTTGA 3120 0.4551 MNSPPNFLSLLLSLLLLTISTPSSSLPELRSLLEFKKGITRDPEKLLDSWAPTTVADSTSTCPSSWQGVFCDEESGNVTGIVLDRLNLGGELKFHTLLDLKMLKNLSLSGNAFSGRLPPSLGSLSSLQHLDLSQNKFYGPIPARINDLWGLNYLNLSNNNFKGGFPSGLNNLQQLRVLDLHANQLWAEIGDVLSTLRNVERVDLSLNQFFGGLSLTVENVSGLANTVHFLNLSHNNLNGRFFTNSTITLFRNLQVLDLSGNSITGELPSFGSLLALRVLRLPRNQLFGSLPEELLQTSMPLEELDLSFNGFTGSIGVINSTTLNILNLSSNSLSGSLPTSLRRCTVIDLSRNMLSGDISVIQNWEAPLEVIVLSSNKLSGSLPSILETYSKLSTVDLSLNELKGSIPRGLVASSSVTRLNLSGNQFTGPLLLQSSGASELLLMPPYQPMEYLDASNNSLEGVLPSEIGRMGALRLLNLARNGFSGQLPNELNKLFYLEYLDLSNNNFTGNIPDKLSSSLTAFNMSNNDLSGHVPENLRHFSPSSFRPGNGKLMLPNDSPETSLVPDNIPDKGRHHSSKGNIRIAIILASVGAAIMIAFVLLAYHRTQLKEFHGRSEFTGQNTRRDVKLGGLSRSSLFKFNTNVQPPTSSLSFSNDHLLTSNSRSLSAGQSEFITEISEHGLTQGMVATSSASLNPNLMDNPPTSSGRKSSPGSPLSSSPRFIEACEKPVMLDVYSPDRLAGELFFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVKHKKEFAREVKRIGSMRHPNIVPLLAYYWGPREQERLLLADHIHGDNLALHLYESTPRRYSPLSFSQRIRVADDVARCLLYLHDRGLPHGNLKPTNIVLAGPDFNARLTDYGLHRLMTPAGIAEQILNLGALGYRAPELATASKPVPSFKADVYALGVVLMELLTRKSAGDIISGQSGAVDLTDWVRLCEREGRVRDCIDRDIAGGEESNKEMDELLAISLRCILPVNERPNIRQVFDDLCSISV* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1227 1039 ProSiteProfiles Protein kinase domain profile. 759 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1227 1039 Gene3D Phosphorylase Kinase; domain 1 740 836 - -
Gso6g1227 1039 MobiDBLite consensus disorder prediction 691 717 - -
Gso6g1227 1039 SMART LRR_typ_2 273 297 IPR003591 -
Gso6g1227 1039 SMART LRR_typ_2 494 518 IPR003591 -
Gso6g1227 1039 SMART LRR_typ_2 172 196 IPR003591 -
Gso6g1227 1039 SMART LRR_typ_2 124 148 IPR003591 -
Gso6g1227 1039 SMART LRR_typ_2 250 272 IPR003591 -
Gso6g1227 1039 Gene3D Ribonuclease Inhibitor 226 561 IPR032675 -
Gso6g1227 1039 ProSiteProfiles Leucine-rich repeat profile. 252 274 IPR001611 GO:0005515
Gso6g1227 1039 MobiDBLite consensus disorder prediction 691 719 - -
Gso6g1227 1039 PANTHER OS07G0626500 PROTEIN 7 1036 - -
Gso6g1227 1039 PANTHER OS07G0626500 PROTEIN 7 1036 - -
Gso6g1227 1039 SUPERFAMILY Protein kinase-like (PK-like) 762 1034 IPR011009 -
Gso6g1227 1039 SUPERFAMILY L domain-like 449 541 - -
Gso6g1227 1039 Pfam Leucine rich repeat N-terminal domain 27 72 IPR013210 -
Gso6g1227 1039 Gene3D Transferase(Phosphotransferase) domain 1 838 1039 - -
Gso6g1227 1039 Pfam Leucine Rich Repeat 497 514 IPR001611 GO:0005515
Gso6g1227 1039 Pfam Leucine Rich Repeat 252 269 IPR001611 GO:0005515
Gso6g1227 1039 SUPERFAMILY RNI-like 83 428 - -
Gso6g1227 1039 Gene3D Ribonuclease Inhibitor 27 220 IPR032675 -
Gso6g1227 1039 Pfam Protein kinase domain 763 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1227 Gso-Chr6 11948585 11953726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1227 21 615 Receptor kinase-like Gene Family AT5G65700 32.244 1.78e-57 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso6g1227 Pkinase 2.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1227 - - gmx:100791498 1947.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1843 4 48691462 48697456 Gso6g1227 6 11948585 11953726 GST