Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1226 ATGTCCAGAGAAAGGGAGAGATTTGATGAGATAGGGAAGAAGATCAAGAGGGAAAGAGATGTTTCATCTCAAATGGGAAGAAGACACATGTTAGGCCCTCCAGGAACCCTAAATACTATCACCCCTTGTGCAGCATGTAAGTTGTTGAGAAGAAGATGTGCCCAAGAATGTCCCTTTTCTCCATATTTCTCTCCCCATGAGCCTCAAAAGTTTGCTTCTGTCCACAAAGTCTTTGGTGCCAGCAACGTCTCAAAGATGCTCATGGAAGTACCAGAGTGTCAAAGAGCTGATGCTGCAAATAGTCTAGTTTATGAGGCTAATGTGAGGCTAAGAGATCCTGTGTATGGATGCATGGGTGCAATTTCTGCTTTGCAACAGCAAGTACAATCTTTACAAGCTGAACTTAATGCAGTGAGAGGTGAAATACTTAAATACAAACTCAGGGAAGCTAACATGATACCCTCCTCTCATCATGTTGGAATGCTCCCTTCATCTGGGGCTGTTTCAATTGCTGCTCCACCGCCGCCACCTCCTCCACCACCACCTCCTCCTCCTCCTCCTTCTCTTCCTCTTCCTCTAACTTCCCCCTCCTCTTCCATATACATCCAACATAGGGATCCCACCACTTATACCACAATTTCAAGTGATAATATCTCCTATTTTGGTTGA 669 0.4484 MSRERERFDEIGKKIKRERDVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRGEILKYKLREANMIPSSHHVGMLPSSGAVSIAAPPPPPPPPPPPPPPPSLPLPLTSPSSSIYIQHRDPTTYTTISSDNISYFG* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1226 222 MobiDBLite consensus disorder prediction 164 208 - -
Gso6g1226 222 Coils Coil 121 148 - -
Gso6g1226 222 MobiDBLite consensus disorder prediction 169 193 - -
Gso6g1226 222 MobiDBLite consensus disorder prediction 194 208 - -
Gso6g1226 222 PANTHER LOB DOMAIN PROTEIN 24 221 - -
Gso6g1226 222 PRINTS Wilm's tumour protein signature 124 140 - -
Gso6g1226 222 PRINTS Wilm's tumour protein signature 172 186 - -
Gso6g1226 222 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Gso6g1226 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 221 - -
Gso6g1226 222 Pfam Lateral organ boundaries (LOB) domain 42 138 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1226 Gso-Chr6 11939026 11941142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1226 27 222 AS2 family AT2G40470 71.429 2.39e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso6g1226 LOB 2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1226 - - gmx:100790799 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1844 4 48704247 48705660 Gso6g1226 6 11939026 11941142 GST