Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1222 ATGGGAACCGTTAGTAACATTGGCTTCCCTTCAGTATTCAGAGTTCCTCTAGATTCACAACAAGCACTATCAAAGCAGATGAAGAATAAATCATCGTGTTGTTTCATGGTTCCTCCTAATCATAACTATTCTATTAGGCCTAGTCCAATACGTTGTAATAAACTATCAGAAAGTGGGATTGAGGAGAACCCCACGACCACAAGCACGAGCAAGAGGCCCTCTAAGAACAAGGACAGGATGGAGGAGTACAATATAGCTATGAAGAGAATGATGAGGAACCCTTATGAGTATCACCATGATCTGGGTATGAATTATACTCTTATAACGGACAACTTGATTGTGGGCTCTCAACCACAGAAACCTGAAGACATAGATCACCTCAAAAAGGAAGAGGGCGTGGCATACATTTTAAACTTACAACAAGATAAGGATGTTGAGTATTGGGGAGTAGACTTGCAGTCAATAATAAGAAGGTGTCGTGAACTTGAAATTAGCCACACGAGGAGACCGGCAAAAGACTTTGACCCAGATTCCTTGCGAAATGGACTACCTAAAGCAGTCTCGTCCTTGGACTGGGCATTTTCTGAGGGAAAAGGAAGAGTTTATGTACATTGTACAGCTGGACTTGGAAGAGCTCCAGCGGCGGCAATTGCTTATTTGTTCTGGTTTTGTGACATGAATCTAAATAAAGCATATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAAGAGCAATACGTGGAGCTACTTACGATTTGGCTAAGAATGATCCGTGGAAGGAGCCATTTGAGAATCTTCCAGAATATGCATTTGAGGATATAGCAGATTGGGAAAGGAACTTGATTCAAGATCGTGTCCGCTCCCTTCGTGGAACTTGA 885 0.4192 MGTVSNIGFPSVFRVPLDSQQALSKQMKNKSSCCFMVPPNHNYSIRPSPIRCNKLSESGIEENPTTTSTSKRPSKNKDRMEEYNIAMKRMMRNPYEYHHDLGMNYTLITDNLIVGSQPQKPEDIDHLKKEEGVAYILNLQQDKDVEYWGVDLQSIIRRCRELEISHTRRPAKDFDPDSLRNGLPKAVSSLDWAFSEGKGRVYVHCTAGLGRAPAAAIAYLFWFCDMNLNKAYDMLTSKRPCGPNKRAIRGATYDLAKNDPWKEPFENLPEYAFEDIADWERNLIQDRVRSLRGT* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1222 294 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 181 240 IPR000387 GO:0016311|GO:0016791
Gso6g1222 294 ProSiteProfiles Dual specificity protein phosphatase domain profile. 104 261 IPR020422 GO:0006470|GO:0008138
Gso6g1222 294 Gene3D Protein tyrosine phosphatase superfamily 87 294 IPR029021 -
Gso6g1222 294 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 101 246 IPR029021 -
Gso6g1222 294 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 2 294 - -
Gso6g1222 294 MobiDBLite consensus disorder prediction 55 79 - -
Gso6g1222 294 Pfam Dual specificity phosphatase, catalytic domain 125 244 IPR000340 GO:0008138|GO:0016311
Gso6g1222 294 SMART dsp_5 104 254 IPR020422 GO:0006470|GO:0008138
Gso6g1222 294 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 2 294 - -
Gso6g1222 294 CDD DSP_laforin-like 103 250 IPR045204 GO:0019203|GO:0046838
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1222 Gso-Chr6 11867314 11870645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1222 30 294 Protein tyrosine phosphatase (PTP) family AT3G10940 72.180 1.64e-141 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1222 - - gmx:100787079 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1848 4 48763011 48766289 Gso6g1222 6 11867314 11870645 GST