Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1208 ATGACTCTTCACCACCGCTTGTTGCTTGTTGATACAAATTCAAGCTCACCTGCACCAAGCAGCATGAATAGAACAAGAGAGACTTTCACTGGTGATGCAAATTTTGATACCAACATGGTGATTATCTTGGCCGCGTTGCTTTGTGCACTTATATGTGCTTTGGGGCTCAACTCAATTGTGAGATGTGCTCTAAGATGCAGCCGCAGGTTTGCTTTCGAGACACCGGAGGAGACCGCGGCACGCTTGGTGGCGAAAGGCCTAAAGAAGAGTGCATTGCATCAGATCCCTATAGTTGTTTATGGTTCAGGTAGTGCTAGTATTGCAGCCACAGACTGTCCAATTTGCCTTGGGGAGTTTGTGGATGGGGAGAAAGTTAGAGTGTTGCCAAAATGTAACCATGGATTCCATGTAAGGTGCATAGATACATGGCTCCTCTCACACTCCTCTTGTCCTAATTGCAGACAATCTTTGCTTGAGCATCCAACTATTTCTGGAGCTGTAGCTGTAGCTGCAGGAACCAGTCATCATGTAGGGAATGCCTTGGGAGGAAGACATCAACATGAGTCTTTATATGTGGCTGTGGAAGTGATTGGCTAA 597 0.4623 MTLHHRLLLVDTNSSSPAPSSMNRTRETFTGDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPEETAARLVAKGLKKSALHQIPIVVYGSGSASIAATDCPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRQSLLEHPTISGAVAVAAGTSHHVGNALGGRHQHESLYVAVEVIG* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1208 198 SUPERFAMILY RING/U-box 111 160 - -
Gso6g1208 198 CDD RING-H2_EL5_like 111 154 - -
Gso6g1208 198 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 8 194 - -
Gso6g1208 198 SMART FANCL_C_2 108 161 - -
Gso6g1208 198 SMART ring_2 112 153 IPR001841 -
Gso6g1208 198 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Gso6g1208 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 161 IPR013083 -
Gso6g1208 198 Pfam Ring finger domain 111 154 IPR001841 -
Gso6g1208 198 PANTHER RING-H2 FINGER PROTEIN ATL74 8 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1208 Gso-Chr6 11726449 11728265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1208 6 162 C3H Transcription Factor Family AT3G10910 60.843 4.47e-61 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1208 - K19040 gmx:100787273 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1861 4 48880793 48882662 Gso6g1208 6 11726449 11728265 GST