Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1205 ATGTCCTCCGAAGACATCACTCTCGTCCCCGACCAGAGGATCGAGAACGGTCTCAATTCCCCTCTCGTCTTCCAAGACGACCCTCTCCGCTTCAATTGCCCCACCCCGCACCACCGCCGGGTCGGAGACCCGCCTCCGAAAACCCGCGAACTTGGCTCCTTCATCGACGACAACAAGATGTTCATCGACCGCGACCGCTTCTTCGCCGCCGCCCACAACCCCGAATTCCGCCGCTACGCTGACTGCTCCGCCCGCCGCGACCCGCGCAATTGGAACACCAACGGCAGCGCCACCGAAGACGACGACTCCGACGACGACGACGAAGATGACGACGACGATGAAGAGGATGACACCGAAGTAGAAGGACTCGTTGGTGATGGAACCAAAAGCGAACTTAAAATTAACAATAACAACGGTGCCGGTGGTGGCGGTAATTTACCTGCTGTTGCAAACGGGAAAGCCCACTCTTACGTTGCTGGAAGACAGCTATTGGTGAAGGATGGTGGAGACATTGGGCAATTGGTGCATAGCAATGTTAGTGGTGGTGATGAAGATCACCGGCAAGAGGGGTTAGGTAAGTCTCAGAATTCTGTTACGGTTGCTGAAACTGACTGCGAGGAGTACTATTCGCACTTTCTTCAAGGCGGCGAAGGGGCTTCTGGGCAGAAAGTTATGGTGGATGACAGTGGTTGTGGGTTTAGTGGGAGGAAGGATGCTATGTATTCCAGCGAGTCAGGGGAGTCACTCAGGGCAATTCTTTCAGATCCTGTTACGGGTGCTCTTATGGATGATGCTGTGATATTACCGTGTGGACATTCATTTGGTGGAGGTGGAATTCAGCATGTTATTAGAATGAAAGCTTGCTGCACTTGTTCTCAACCCACGACTGAGGAATCAATATCTCCCAACCTATCACTCCGGATTGCTGTGCAGGCATACCGTCGTGAAGAGGAGTCACAATTTTACCGGTCACCTAAAAGAAGAAGAGAGAGATTTGATCAGGGTGGTTTTGGAGATTCAGTTGTTATGGAACCATCAAGGAGTAGAGGTGTTCAGTTTCCATTTGCTGTGATGGACCGGGTTATCATAAAGGGAAATAAAAGGACACCACAACGCTTTGTTGGGCGCGAAGCTATTGTTACAACGCAATGCCTGAATGGATGGTATGTGGTGAAGACATTGGACAATGCAGAAAGTGTAAAGTTGCAGTATAGATCCCTTGCAAAGGTTATGGATGATCCTTCAAAACCTGCTGCCTCCAGCAAGATGCCACCAAATTGGCTTTAG 1287 0.5074 MSSEDITLVPDQRIENGLNSPLVFQDDPLRFNCPTPHHRRVGDPPPKTRELGSFIDDNKMFIDRDRFFAAAHNPEFRRYADCSARRDPRNWNTNGSATEDDDSDDDDEDDDDDEEDDTEVEGLVGDGTKSELKINNNNGAGGGGNLPAVANGKAHSYVAGRQLLVKDGGDIGQLVHSNVSGGDEDHRQEGLGKSQNSVTVAETDCEEYYSHFLQGGEGASGQKVMVDDSGCGFSGRKDAMYSSESGESLRAILSDPVTGALMDDAVILPCGHSFGGGGIQHVIRMKACCTCSQPTTEESISPNLSLRIAVQAYRREEESQFYRSPKRRRERFDQGGFGDSVVMEPSRSRGVQFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVMDDPSKPAASSKMPPNWL* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1205 428 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 64 428 - -
Gso6g1205 428 SUPERFAMILY RING/U-box 247 320 - -
Gso6g1205 428 MobiDBLite consensus disorder prediction 29 49 - -
Gso6g1205 428 MobiDBLite consensus disorder prediction 32 49 - -
Gso6g1205 428 ProSiteProfiles U-box domain profile. 248 320 IPR003613 GO:0004842|GO:0016567
Gso6g1205 428 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 64 428 - -
Gso6g1205 428 MobiDBLite consensus disorder prediction 85 143 - -
Gso6g1205 428 MobiDBLite consensus disorder prediction 98 121 - -
Gso6g1205 428 Pfam U-box domain 254 318 IPR003613 GO:0004842|GO:0016567
Gso6g1205 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 318 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1205 Gso-Chr6 11705097 11710725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1205 194 428 Plant U-box Gene Family AT5G05230 60.744 1.80e-89 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1205 - - gmx:100786717 816.994