Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1204 ATGAAAATCAGCAAGAAGAAGGGTCTCAAGCCTGAACAACAAGAAAAGGCTTCCAATTCAAACAAGGAGGAAGTGATAGATTTCATGGAGCTTTCAAATAAGGCTCAAGAACAAGAACAACCATCAAGTAAGGTGGTTGATTCACCTCTTTGTGACTCTAAAGGTGCAGATGATGAAAATACAAAGCTAGAAGCAAAGACTTTCTCATGCAACTATTGCAAGAGAGAGTTTTCTACCTCGCAAGCTTTGGGGGGACACCAAAATGCGCATAAACAAGAACGTGCTCTTGCTAAACGTCGCCAAGGTTTTGATGTTGGTGGTTTTGGACACTTTCCTTACTACCCTTATCCAAGTTTTTACAACTCAAATTCTCTTTATGGAGGATCTTTCAATAGGGCACTTGGGGTCCGAAACGATTCCATGATTCACAAGCTTCCTTGGACCCCAAGGTATGATCATTCTTGGTTGAAACAACAAGATCATGTGCCCATGCCGAATTCGTCAATCTTTGATGGGTTTGGAATTGTGAAAGGTTGTTATCCAATTATAAAGAGTGATGGAACTCTAAGTTTAAGGCAAGAGAATGGTAATGCCAATGATGGAACACTTTCTCTTTTTCCAAATGCTGCTGCCAATTCAACAAGCCAACTTGTAAACAATGGTGGTAATGCCAATGATGGAACACTTTCTCTTTTTGCAAATGCTGCCACCAATTCATCAAGCCTACTTGGAAACAGAGAAATTCTTGCAACCAAAATTGATGATCATTCCATGCCAGAAGAAACCTCCAAAGCTGCTTCTGCCAATCTTGATTTGTCACTTAAGCTTTAA 831 0.4019 MKISKKKGLKPEQQEKASNSNKEEVIDFMELSNKAQEQEQPSSKVVDSPLCDSKGADDENTKLEAKTFSCNYCKREFSTSQALGGHQNAHKQERALAKRRQGFDVGGFGHFPYYPYPSFYNSNSLYGGSFNRALGVRNDSMIHKLPWTPRYDHSWLKQQDHVPMPNSSIFDGFGIVKGCYPIIKSDGTLSLRQENGNANDGTLSLFPNAAANSTSQLVNNGGNANDGTLSLFANAATNSSSLLGNREILATKIDDHSMPEETSKAASANLDLSLKL* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1204 276 SUPERFAMILY beta-beta-alpha zinc fingers 65 95 IPR036236 -
Gso6g1204 276 MobiDBLite consensus disorder prediction 1 30 - -
Gso6g1204 276 Gene3D Classic Zinc Finger 53 104 - -
Gso6g1204 276 MobiDBLite consensus disorder prediction 1 57 - -
Gso6g1204 276 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Gso6g1204 276 MobiDBLite consensus disorder prediction 33 47 - -
Gso6g1204 276 Pfam C2H2-type zinc finger 68 92 - -
Gso6g1204 276 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Gso6g1204 276 PANTHER ZINC FINGER PROTEIN JAGGED 9 276 IPR045320 GO:0003700
Gso6g1204 276 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 9 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1204 Gso-Chr6 11699859 11700689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1204 60 144 C2H2 Transcription Factor Family AT5G10970 50.575 6.14e-19 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso6g1204 zf-C2H2_6 3.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1204 - - gmx:102668197 533.102