Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1200 ATGATGGAAGAGGTAATAAATTCGATTCGACGCGCTTGTGTATTGGCCCAAAACCTTGAACAAGACCTACCCAACTTGGCGAACCAACCAGCTATGATGTCCTTGTCCATTGATCAGATAACTGAGGCTTTCAGTGGTGCCAAGGAAAAGATGTTACAATTTTCCCGACAGAACCAAACTTCGGACGAATCTCCTCCAACGTTGGTTCATGAAACGACACAGCTGCAACCTCAGATGGATGCTACTCTAATGCAGGAATGGCTAAGGTCTAGTCATGCACTAACAATGGATCAGTTGTTTCAAATGCATCAGTTTCATGCTGCAAGGAGTACCCTTCAGATTGGTGAAATGGGAGGGAGAGATGGGGAAGATAATTTTGAGAGAAACAAGGGACCTGAAGAAATGCAAGGAATCAACGAATCTTCATCACGACCACGAAGAAGGGAAGCTAATCAAGAGAAGAGAAAAGTGATGGTTCCTGCCCCACAGTTTGGAAACACAGAGATGCCACCGGAGGATGGCTTCACTTGGAGGAAATATGGCCAGAAAGAAATACTTGGCTCCAAGTTCCCAAGGAGTTACTACAGGTGCACACACCAAAAGTTATATGAATGCCAAGCCAAGAAGCAAGTGCAAAGACTTGATCAAAACCCTAACATATTCGAAGTAACATATAGAGGAGACCACACTTGCCACATGTCCTCCACAGCATTATCATCAGTTCCACTTCAACAACTACTTGTGGACATAACACAAAATAACAGTAACACCATTTCCTCCCAATTGTCTCCGACAATGAACCTCAGCCTCCACCCTGGTGGCGGCAGTGGCACTGCTGCCAGCAGTGGTGGAGCCTCCGCTTCAAGATTCGGTGGTGATTATCCTGTGGTGGATATGGCTGATGCTATGTTCAACTCTCGTAGCAGCAGTAATAACAGCATGGAATTTCTCTTCTCTCCCGAAGATAAAAGTGATCCAAAAATTGAATAG 990 0.4505 MMEEVINSIRRACVLAQNLEQDLPNLANQPAMMSLSIDQITEAFSGAKEKMLQFSRQNQTSDESPPTLVHETTQLQPQMDATLMQEWLRSSHALTMDQLFQMHQFHAARSTLQIGEMGGRDGEDNFERNKGPEEMQGINESSSRPRRREANQEKRKVMVPAPQFGNTEMPPEDGFTWRKYGQKEILGSKFPRSYYRCTHQKLYECQAKKQVQRLDQNPNIFEVTYRGDHTCHMSSTALSSVPLQQLLVDITQNNSNTISSQLSPTMNLSLHPGGGSGTAASSGGASASRFGGDYPVVDMADAMFNSRSSSNNSMEFLFSPEDKSDPKIE* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1200 329 Gene3D WRKY domain 161 234 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso6g1200 329 SUPERFAMILY WRKY DNA-binding domain 168 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso6g1200 329 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 267 IPR044810 GO:0003700
Gso6g1200 329 MobiDBLite consensus disorder prediction 117 157 - -
Gso6g1200 329 MobiDBLite consensus disorder prediction 266 285 - -
Gso6g1200 329 MobiDBLite consensus disorder prediction 120 155 - -
Gso6g1200 329 PANTHER WRKY TRANSCRIPTION FACTOR 55 2 267 - -
Gso6g1200 329 Pfam WRKY DNA -binding domain 172 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g1200 329 ProSiteProfiles WRKY domain profile. 172 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g1200 329 MobiDBLite consensus disorder prediction 308 329 - -
Gso6g1200 329 SMART WRKY_cls 171 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1200 Gso-Chr6 11647172 11651502 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1200 2 324 WRKY Transcription Factor Family AT2G40740 38.922 2.23e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso6g1200 WRKY 3.6e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1200 - - gmx:100786198 628.246