Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1199 ATGAGTATTCTCTTCCCAAGAAGTTCCTCAGCAGCAAAGAGGAAAAGGGTCATTAGAGAACTTGTTCAGGGTCGAGACTATGCTACTCAGTTGAAGTTTCTGCTTCAGAAGCCTATTGGCCCTGATGGGTCTGTTTCTGCTAAGGAACTTGTGGCCAATGTGCTGAGATCTTTCGCTGAAACTCTCTCTGTGTTGACTTCTTCTTCCGAGGATTCAACAAGTGGTCATGATCATGACGACGAGGTTATTGCTCAGAATCTTGTAATTTCCGGAGAAGATGCCTCGCAGGTGGCAAGCATTAATGATCCGAGTTCTGAGGATTCGACTGAGAGTAGGAAGGGATCAAAGGATCGGAGAGGGTCCTATAAAAGAAGGAAGACTGAACAGACATGGACTATAGTTGCCCAAACTACTGATGATAATCATGCATGGAGAAAGTACGGACAAAAGGAAATCCTAAATTCTCAATTTCCCAGGAGTTACTTCAGGTGCACTAGAAAGTTTGAACAAGGTTGCCGAGCAACCAAACAAGTGCAACGGATACAAGAGAATCCCGATAGGTACAACATTACGTACATAGGCTTTCACACATGCAAAGACACCCTCAAGGCTCCACAAGTGGTGACACATTCTAAAACTTGGGACTCATTTCTTGGTCCTGAATCAAATGTGCCAAATGAACATTATTCCACCATTGGATCACAAAGCCAAATTGTAATACAAGAATATCCCAACGATGAGACTGATCCAAGTGATCTCACAGATGCTAACCTGTGGTCTGATTTGAAGGATTTTGAACTATCCAATGACAAGCCTGCAGGTTTGAAAATAGCACCTGAAAATGCAGATTCTGTGTATTCATGCACTGGCTCGAGAAGTTTGGACATGGATTTTGGGATATTCTCTCCTCATTTCTGCAGCACCGAGGACTTCCACTTTGATGAAAGCCAATTGCTTTAG 960 0.4323 MSILFPRSSSAAKRKRVIRELVQGRDYATQLKFLLQKPIGPDGSVSAKELVANVLRSFAETLSVLTSSSEDSTSGHDHDDEVIAQNLVISGEDASQVASINDPSSEDSTESRKGSKDRRGSYKRRKTEQTWTIVAQTTDDNHAWRKYGQKEILNSQFPRSYFRCTRKFEQGCRATKQVQRIQENPDRYNITYIGFHTCKDTLKAPQVVTHSKTWDSFLGPESNVPNEHYSTIGSQSQIVIQEYPNDETDPSDLTDANLWSDLKDFELSNDKPAGLKIAPENADSVYSCTGSRSLDMDFGIFSPHFCSTEDFHFDESQLL* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1199 319 Gene3D WRKY domain 123 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso6g1199 319 Pfam WRKY DNA -binding domain 139 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g1199 319 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 6 304 IPR044810 GO:0003700
Gso6g1199 319 PANTHER WRKY DNA-BINDING TRANSCRIPTION FACTOR 70 6 304 - -
Gso6g1199 319 SUPERFAMILY WRKY DNA-binding domain 135 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso6g1199 319 SMART WRKY_cls 138 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g1199 319 MobiDBLite consensus disorder prediction 106 126 - -
Gso6g1199 319 ProSiteProfiles WRKY domain profile. 139 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g1199 319 MobiDBLite consensus disorder prediction 94 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1199 Gso-Chr6 11639597 11642312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1199 9 215 WRKY Transcription Factor Family AT3G56400 44.076 2.27e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso6g1199 WRKY 1.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1199 - - gmx:100778162 626.706