Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1191 ATGAAGGTGCAGTTCTCTATTGTTGCACTTGTTCTATTAGGCTCCACACTGTGTCTTTCTGGCCTAATTGTAGCTGACTTGAACTCTGACCAACAAGCTCTCTTGGAGTTTGCTTCAAGTGTCCCACATGCCCCAAGGCTCAACTGGAAGAAAGATTCTGTTTCAATTTGCACCTCATGGGTTGGTGTGACATGCAACTCAAACGGCACACGTGTCGTTGGCCTTCACCTTCCAGGAATGGGATTAATCGGTACCATTCCAGAGAACAGCATAGGAAAACTAGATGCTCTTAGGGTCCTGAGTCTTCATTCCAATGGCCTTATAGGAAGTCTTCCTTCTAACATTCTCTCCATTCCTTCACTCCAATTTGCATACCTTCAGCACAATGGCTTCTCTGGCATTATTCCTTCTCCTGTGACCCCTAAACTCATGGCATTGGACATTTCCTTTAACAACTTTTCTGGCAGCATTCCACCAGCTTTTCAGAACCTTAGAAGACTCACTTGGTTGTATCTCCAAAACAATTCTATATCTGGAGCTATTCCTGACTTCAACCTTCCAAGTCTCAAGCATTTGAACTTGAGCAATAATAACTTGAATGGCTCAATTCCAAATTCCATAAAGACATTTCCTTACACTTCTTTTGTAGGAAATTCTCTCTTATGTGGTCCACCTCTCAATCATTGCTCTACAATCTCCCCTTCTCCATCTCCTGCCACTGATTACCAGCCCCTCACTCCACCAACCACACAAAACCAAAATGCTACACACCATAAGAAAAACTTTGGCCTAGCTACTATACTTGCTCTAGTCATTGGGGTCATTGCCTTCATCTCTTTAATAGTTGTAGTGATCTGTGTGTTCTGTTTGAAGAAGAAGAAAAACAGCAAAAGCAGTGGCATACTGAAAGGAAAGGCTTCTTGTGCTGGGAAGACTGAGGTTTCAAAGAGTTTTGGGAGTGGAGTGCAAGGGGCTGAAAAGAACAAGCTCTTTTTCTTTGAAGGTTCCTCTCATAGCTTTGACCTTGAGGATTTGCTGAAGGCTTCAGCTGAAGTTCTTGGAAAAGGAAGCTATGGAACAGCATACAAGGCTGTTTTGGAGGAGGGAACAACAGTGGTAGTTAAAAGGTTGAAGGAAGTTGTGGTTGGAAAGAAGGAGTTTGAGCAGCAGTTGGAGATTGTGGGGAGAGTTGGAAGCCACCCCAATGTGATGCCCCTAAGGGCTTATTACTACTCCAAAGATGAGAAACTTCTGGTTTACAACTACATGCCAGGTGGCAGCTTGTTTTTCTTGTTGCATGGAAACAGGGGAGCAGGAAGAACCCCACTAGACTGGGACTCCAGAGTGAAGATTTTGCTAGGAGCTGCCAAGGGAATAGCTTTCATCCACTCAGAGGGGGGTCCAAAGTTCGCACATGGCAACATCAAGTCAACAAACGTGCTCATAAACCAAGAACTCGACGGCTGCATCTCCGACGTGGGATTGCCTCCTTTAATGAACACTCCAGCAACCATGTCAAGAGCCAATGGCTACAGAGCTCCAGAAGTCACTGACTCAAAGAAGATCACTCACAAGTCCGATGTCTACAGCTTCGGGGTGCTGCTGCTAGAAATGCTGACAGGGAAGACCCCTCTGAGGTATCCTGGCTATGAGGATGTGGTTGATCTTCCAAGGTGGGTGAGGTCTGTTGTCAGAGAGGAATGGACTGCAGAAGTGTTTGATGAGGAGCTTCTGAGAGGGCAATATGTTGAAGAGGAGATGGTTCAGATGCTTCAGATTGCATTGGCATGTGTGGCTAAGGGGCCTGATCAAAGGCCTAGAATGGATCAAGTTGTTAGAATGTTGGAGGAGATTAAGCATCCTGAGTTGAAGAACTACCACAGGCAATCCTCTGAGTCTGAGTCTAATGTGCAGACACCAACACCATGA 1929 0.4541 MKVQFSIVALVLLGSTLCLSGLIVADLNSDQQALLEFASSVPHAPRLNWKKDSVSICTSWVGVTCNSNGTRVVGLHLPGMGLIGTIPENSIGKLDALRVLSLHSNGLIGSLPSNILSIPSLQFAYLQHNGFSGIIPSPVTPKLMALDISFNNFSGSIPPAFQNLRRLTWLYLQNNSISGAIPDFNLPSLKHLNLSNNNLNGSIPNSIKTFPYTSFVGNSLLCGPPLNHCSTISPSPSPATDYQPLTPPTTQNQNATHHKKNFGLATILALVIGVIAFISLIVVVICVFCLKKKKNSKSSGILKGKASCAGKTEVSKSFGSGVQGAEKNKLFFFEGSSHSFDLEDLLKASAEVLGKGSYGTAYKAVLEEGTTVVVKRLKEVVVGKKEFEQQLEIVGRVGSHPNVMPLRAYYYSKDEKLLVYNYMPGGSLFFLLHGNRGAGRTPLDWDSRVKILLGAAKGIAFIHSEGGPKFAHGNIKSTNVLINQELDGCISDVGLPPLMNTPATMSRANGYRAPEVTDSKKITHKSDVYSFGVLLLEMLTGKTPLRYPGYEDVVDLPRWVRSVVREEWTAEVFDEELLRGQYVEEEMVQMLQIALACVAKGPDQRPRMDQVVRMLEEIKHPELKNYHRQSSESESNVQTPTP* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1191 642 MobiDBLite consensus disorder prediction 233 254 - -
Gso6g1191 642 ProSiteProfiles Leucine-rich repeat profile. 188 210 IPR001611 GO:0005515
Gso6g1191 642 ProSitePatterns Protein kinases ATP-binding region signature. 353 384 IPR017441 GO:0005524
Gso6g1191 642 MobiDBLite consensus disorder prediction 622 642 - -
Gso6g1191 642 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515
Gso6g1191 642 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Gso6g1191 642 Pfam Protein kinase domain 351 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1191 642 Gene3D Ribonuclease Inhibitor 23 86 IPR032675 -
Gso6g1191 642 Gene3D Ribonuclease Inhibitor 87 234 IPR032675 -
Gso6g1191 642 Gene3D Transferase(Phosphotransferase) domain 1 423 640 - -
Gso6g1191 642 CDD STKc_IRAK 353 618 - -
Gso6g1191 642 PANTHER RECEPTOR-LIKE KINASE 3 642 - -
Gso6g1191 642 SUPERFAMILY Protein kinase-like (PK-like) 351 619 IPR011009 -
Gso6g1191 642 SUPERFAMILY L domain-like 37 227 - -
Gso6g1191 642 Gene3D Phosphorylase Kinase; domain 1 313 422 - -
Gso6g1191 642 ProSiteProfiles Protein kinase domain profile. 347 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1191 642 Pfam Leucine Rich repeats (2 copies) 166 204 IPR025875 -
Gso6g1191 642 PANTHER OS05G0588300 PROTEIN 3 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1191 Gso-Chr6 11574267 11578961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1191 7 638 Receptor kinase-like Gene Family AT5G58300 59.624 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso6g1191 Pkinase 1.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1191 - - gmx:100818444 1234.17