Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1189 ATGGGGAGGAGGCCTGCAAGGTGTTACCGGCAGATAAAAAACAAGCCATACCCCAAATCACGTTTCTGCCGTGGTGTTCCTGATCCTAAGATCAGAATTTATGATGTTGGTATGAAGAAGAAAGGTGTTGATGAGTTTCCCTTCTGCGTTCATCTGGTTAGCTGGGAAAAAGAAAATGTTTCAAGTGAAGCATTGGAAGCTGCTAGAATTGCATGCAACAAATATATGGCGAAATTTGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGAGTACATCCATTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCATTTGGAAAGCCACAGGGAACATGTGCTAGAGTCGCCATTGGTCAGGTTCTTCTTTCTGTCCGCTGTAAGGACAGCAACAGTCATCATGCACAGGAGGCTCTTCGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATAGTTAGCAGGAAATGGGGTTTCACCAAGTTCAGCCGTGCTGATTATCTCAAGTACAAGTCAGAGAGCAGGATTGTGCCTGATGGTGTGAATGCTAAGCTTCTTGGGTGCCATGGACCACTGGCAAACCGTCAACCTGGACAAGCTTTTTTATCTAGTGCTACTGCTACTGCTTAG 672 0.4539 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKYKSESRIVPDGVNAKLLGCHGPLANRQPGQAFLSSATATA* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1189 223 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gso6g1189 223 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Gso6g1189 223 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 218 - -
Gso6g1189 223 Gene3D Ribosomal protein L10e/L16 1 218 IPR036920 GO:0003735|GO:0005840|GO:0006412
Gso6g1189 223 PANTHER 60S RIBOSOMAL PROTEIN L10 1 218 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gso6g1189 223 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Gso6g1189 223 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gso6g1189 223 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Gso6g1189 223 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1189 Gso-Chr6 11563475 11565974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1189 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.273 1.10e-145 403