Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1188 ATGGAATCGTCACCGTCGTCTTCGTCTTCGTCGATGTCGTCGTCGTCTGGAAGCGATACCAGCGGTGGTGGTGGTGGTGGCGCTGTCACCTGGTTCGGGATGAGTTTCCCATTCCGTTCTCCGCTATCTCTCGTCATGGATTACTGCGCGCGCGAGGATTCCGCGGAGCCTGTGATTATCATTCCCCGCACGCGCCCTCGGTTTCAGGCGCATGCCGAATCCGCCTCTGCTTCGTCCTCTGATTCCGATGAGAATGCCTGCAACGGCGCTGCTGAGGAGGTTGCGATACGCATAATTGGGGCCGGCGAGCAGGAGAGCGGTTCGTCGCCATCGTCGTCGTCGAGGGGCCGGGGAGGGGAGCCGGGTTGTGAGGAGGCGGTGGTTGGGAGGAGTGGGATGCTTTCGTCGGAGGCTCGCCGGCGAATGGCGGAGGAAAGGGTGCCTTTGGTGTCTTTGGATGATGGGATTGGTGGCGTTAGGGAATCTTCCTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCATCGTCCTCTACTTACCAGAGGTATGATATTCAGCAGGTTGCGAAGTGGATTGAGCAGATTCTACCGTTTTCTCTCTTGTTGCTGATTGTTTTCATCCGCCAACATTTGCAAGGTTTCTTTGTCACAATTTGTATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAGGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTGCATGTGATAAGCATTTACTGGTGGTATCAAAATGATGATCTTTTATACCCACTGGCCATGCTTCCACCAAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTGAACAAGGATTATGGAAGTCTCTTTTCCTCATTGACTACAGGATTGTATCTAACTTTCAAGCTAACATCAGTAGTTGAGAAGGTCCAATGCTTTGTTTCTGCCTTAAAAGCATTATCAAAAAAGGAAGTTCATTATGGGGTTTATGCCACAACGGAACAGGTGAATGCTGCTGGTGACTTGTGTGCTATATGCCAGGAGAAGATGCAGGCTCCCATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGGTTTGAGAGAGAACGAACTTGCCCATTATGCAGGGCATTGGTAAAACCAGCTGATCTGCGGACCTTTGGAGATGGATCAACAAGTCTGTTTTTTCAGTTGTTTTAA 1422 0.4789 MESSPSSSSSSMSSSSGSDTSGGGGGGAVTWFGMSFPFRSPLSLVMDYCAREDSAEPVIIIPRTRPRFQAHAESASASSSDSDENACNGAAEEVAIRIIGAGEQESGSSPSSSSRGRGGEPGCEEAVVGRSGMLSSEARRRMAEERVPLVSLDDGIGGVRESSSSSSSSSSSSSSSSTYQRYDIQQVAKWIEQILPFSLLLLIVFIRQHLQGFFVTICISAVMFKSNEIVKKQTALKGDRKVSVLLGISFAFVLHVISIYWWYQNDDLLYPLAMLPPKTPPPFWHTIFIILVNDTLVRQAAMAFKCLLLIYYKNGRGHNFRRQGQMLTLIEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFVSALKALSKKEVHYGVYATTEQVNAAGDLCAICQEKMQAPILLSCKHMFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1188 473 MobiDBLite consensus disorder prediction 1 30 - -
Gso6g1188 473 MobiDBLite consensus disorder prediction 154 176 - -
Gso6g1188 473 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 473 - -
Gso6g1188 473 ProSitePatterns Zinc finger RING-type signature. 427 436 IPR017907 -
Gso6g1188 473 MobiDBLite consensus disorder prediction 1 23 - -
Gso6g1188 473 MobiDBLite consensus disorder prediction 158 176 - -
Gso6g1188 473 MobiDBLite consensus disorder prediction 101 136 - -
Gso6g1188 473 SMART ring_2 412 449 IPR001841 -
Gso6g1188 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 387 460 IPR013083 -
Gso6g1188 473 ProSiteProfiles Zinc finger RING-type profile. 412 450 IPR001841 -
Gso6g1188 473 Pfam Zinc finger, C3HC4 type (RING finger) 410 453 - -
Gso6g1188 473 CDD RING-HC_RNFT1_like 411 450 - -
Gso6g1188 473 SUPERFAMILY RING/U-box 403 455 - -
Gso6g1188 473 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 473 IPR044235 GO:0061630|GO:1904294
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1188 Gso-Chr6 11547093 11555510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1188 39 473 C3H Transcription Factor Family AT5G01960 63.326 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1188 - K22379 gmx:100784614 840.106