Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1186 ATGGAGGCACTGTTGTGCAGAAAACTGGGTGATCCAACGGTATCTTTGGAAGACAACGATGATAGCCCAATAGTTCTGTCAAAGAATCATCCAATTCCCCAACTCGATTCTCCCACTGCAGTAAGAGTGAGAATCAAAGCCACAAGCTTGAACTTCGCCAACTACTTGCAGATACTGGGCAAGTACCAAGAGAAACCCTCTTTGCCCTTCATTCCCGGTTCGGATTTTTCTGGCTTCGTCGACGCCGTTGGATCCAAAGTTTCCAAATTCCGAGTCGGCGACGCCGTTTGCTCCTTCGCCGGCCTCGGCTCCTTCGCTCAGTTCATCGTCGTTGACGAGTCCCAGTTGTTTCAAGTGCCCCAAGGTTGTGATCTTGTTGCTGCTGGGGCACTTGCTGTGGCGTCTGGCACTTCTCATGTAGCACTTGTTCATAGGGCCCAATTGAGCTCCGGTCAGGTGTTGTTGGTTTTGGGTGCAGCTGGAGGTGTGGGACTTGCTGCTGTGCAAATTGGAAAAGCATGTGGGGCCATTGTCATTGCTGTTGCTCGGGGTGCTGAAAAGGTGCAGCTCTTGAAATCTCTTGGTGTTGATCATGTGGTGGACTTGGGTAATGAAAATGTTACTCAGAGTATCAAACAGTTCCTTCAGGCTAGAAAGCTCAAGGGGATTGATGTCCTGTATGACCCAGTTGGAGGCAAGCTCACCAAAGAATCTTTGTGGCTTCTGAAATGGGGAGCTCACATTCTCATAATTGGGTTTGCGAGTGGAGAAATTCCTTTAATCCCTGCTAACATAGCTCTTGTTAAGAATTGGACAGTGCATGGCCTTTACTGGGGTAGCTATAAAATACACCGCCCAGGTGTTCTCGAAGATTCACTCAAGGAGCTACTGTCTTGGTTGGCAAGAGGCTTGATTTCCATCCATATTTCTCATTCTTACCCCTTGTCAGAGGCCAACCTTGCCTTTTCTGCCATCAAAGATAGGAAAGTTATTGGGAAGGTGATGATTGTTTTTGATGAGAAACCTACAAGATCTAAGCTCTGA 1044 0.478 MEALLCRKLGDPTVSLEDNDDSPIVLSKNHPIPQLDSPTAVRVRIKATSLNFANYLQILGKYQEKPSLPFIPGSDFSGFVDAVGSKVSKFRVGDAVCSFAGLGSFAQFIVVDESQLFQVPQGCDLVAAGALAVASGTSHVALVHRAQLSSGQVLLVLGAAGGVGLAAVQIGKACGAIVIAVARGAEKVQLLKSLGVDHVVDLGNENVTQSIKQFLQARKLKGIDVLYDPVGGKLTKESLWLLKWGAHILIIGFASGEIPLIPANIALVKNWTVHGLYWGSYKIHRPGVLEDSLKELLSWLARGLISIHISHSYPLSEANLAFSAIKDRKVIGKVMIVFDEKPTRSKL* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1186 347 Pfam Alcohol dehydrogenase GroES-like domain 39 98 IPR013154 -
Gso6g1186 347 SUPERFAMILY GroES-like 28 149 IPR011032 -
Gso6g1186 347 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 151 172 IPR002364 GO:0008270|GO:0016491
Gso6g1186 347 SMART PKS_ER_names_mod 19 336 IPR020843 GO:0016491
Gso6g1186 347 Gene3D - 35 332 - -
Gso6g1186 347 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1 337 - -
Gso6g1186 347 CDD QOR1 1 336 - -
Gso6g1186 347 PANTHER QUINONE OXIDOREDUCTASE-LIKE PROTEIN 2 1 337 - -
Gso6g1186 347 Gene3D - 134 281 - -
Gso6g1186 347 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 123 286 IPR036291 -
Gso6g1186 347 Pfam Zinc-binding dehydrogenase 162 301 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1186 Gso-Chr6 11521892 11525362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1186 69 267 Monolignol Biosynthesis Gene Families AT1G72680 25.847 1.28e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1186 K00344 - gmx:100815246 647.506