Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1180 ATGGAGATTCTGAAAGCTGCAATTCCAGAAAACCTGAAGCGAGCGATAGCGGATAGCGATGTGGATGACCTTGGCAGCACATGCTCTTCTCTTCACCGCTTCTTTCTTCACTTCCACCCATTTCACCAGATGATCACTGAACTGGCTGATCCAAAGTACGCTCTGTCCGGTAAGAATAAGGACGCTGCGTTGAAATCCAAGCAGCTTGGCAATCAGTGCTTCTCCAACGCAGATTATGCTAAGGCCTTGGACTGCTACACTCAGGCATTGCGTGAGGCTCCATTAGACACTGGTGATATGGAGAGTAATCTTGTTGCAACATTGTATATCAATCGTGCTACTGTATTGCATAAAATGAGTCTTTTAGTTGAATGCTTACGGGATTGCACTCGAGCTCTTCAAGTTTGTCCTAGCTATGCAAAGGCATGGTACAGGAGAGGTAAGGCAAATGCTTCGTTGGGAAATTATAAAAATGCAATCTGCGATCTAAATGTGGCCAAGAGTGTGGAACCTTCAATGGGTGGGAGGAGACAAATAGAAGGTGAACTTAAAATTCTTTTAGACCAATGCAGAAGCACAACTGCAGTAGTACAAATACAACATAAGGAGAACAACTGCAATACTGTGGGTGAGATGCCTCACATAAAGCTACAGTGTGTCTCCACACCTGATAAGGGAAGAGGCATGGTGTCATCATGTGTCATTTCACCAGGTTCTTTGGTTCATGTTGAAGAACCTTATGCTATGATAATATTAAAGCAATGTCGGGAAACGCATTGCCATTATTGCTTGAATGACCTACCTGCTGATAGAGTTCCTTGTATATCATGTTCAATACCATTGTATTGCTCCCACCAATGCCAGACACGGGCAACTGGGCAAATGTTCAAGATTTACCCAGACTATAATGGCTTTTTTAAAAACTTGCCCAGTGATCTTGGAGAATATGCTGCTGAAGTTATTCAATGCAATGATTCTGAACAGGAAATTGGGGATATAACTGAACATAAACATGAATGTCAAGGTGTACATTGGCCTGTGGTACTGCCGTCTGAGATAGTTTTGGCTGGTCGAATACTTGCTAGGTTTTTGCTAAATAGCTCACCTGAAGATATTATAAACTTTGTGGAAAGACTGGAGCTTTCTCATTGTTACAAACAATTGCCATCTGAAAGCAAATTGGATTCACATATATATGCCATTGTATTATTATATTGTCTTCAACATTCTTGTGGAACTATGTTTTCCATAGATGAAGTCTCCATATCTCAGGTTGTCATAATTATTTCTCAAATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAATCAATAGACGCCCATGGATCAGGTCATTTTGGAGATTTTCCATTTCAATCTGGTGCTCATTCAACTAGTAATGTGGAACAGGTCAGAGTGGGTAAAGCTATTTATAAAGCTGGCAGTTTATTCAACCATTCTTGCCAGCCAAATGTTCATGCATATTTTCTTTCACGCGCTCTTTATTTACGAACCACAAATGTTGTAGCAGCTGGGAGTCAGCTAGAATTGTCTTATGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGGCTTAATTTTCTCAAAAACGAGTATGCGTTTCATTGTCTGTGTACTGGTTGTTCAGAAGTTAATCGATCTGACCTTGTCCTCAATGCCTTCCATTGTGTCAATCCAAATTGTTCTGGTGCAGTGTTAGAAAGCAGAGTACTTGATTGTGAGATGCAGAAAATCAAGCACTTCCCTATTCCTGACCATGTTGACAAGAATGATGACATTTATGAAGTATGTCATCATGTCTTCAAACAAAATGGTAAATCTATTCATATTCAACCTGGATACTGTTTGAAATGTGGTTCTTACTGTGATTTGGAGTCTTCGCATGCTGCAGTCGGTAAAGCTTTAGCATGCATAACAAGGTTGCAGGATGCAATATTGTCACAACAAATTTCAAGTATTACCATCTCTGATGCGTTGAGATCTCTAAAATTGCTAAGATTAAATTTGCATGCATACAACAAGCTCACTGCAGAGGCAGAAGACAGCATTGCCCAGGCTTTTTGTTTAGTGGGAGAATTACAATTATCTTTGGATCATTGTAAAGCATCTATCCAGATTCTGGAAAAGCTATATGATACTGATGATATTGTTATTGCTTATGAACTTGTGAAGCTTTCTTCCATCCAACTTTCCTTGGATGATGGTACTGCTGTGGAAAGTATAAGTCGAATAGATGATATCTTCTCACGTTACTATGGACTTCATGCAGACTTGGTCTTCCCTTATCTTCAATACCTTAGGAGAGAAGTTGAGAAATTTTCAATGAAGGCTCTCCAATAA 2361 0.3981 MEILKAAIPENLKRAIADSDVDDLGSTCSSLHRFFLHFHPFHQMITELADPKYALSGKNKDAALKSKQLGNQCFSNADYAKALDCYTQALREAPLDTGDMESNLVATLYINRATVLHKMSLLVECLRDCTRALQVCPSYAKAWYRRGKANASLGNYKNAICDLNVAKSVEPSMGGRRQIEGELKILLDQCRSTTAVVQIQHKENNCNTVGEMPHIKLQCVSTPDKGRGMVSSCVISPGSLVHVEEPYAMIILKQCRETHCHYCLNDLPADRVPCISCSIPLYCSHQCQTRATGQMFKIYPDYNGFFKNLPSDLGEYAAEVIQCNDSEQEIGDITEHKHECQGVHWPVVLPSEIVLAGRILARFLLNSSPEDIINFVERLELSHCYKQLPSESKLDSHIYAIVLLYCLQHSCGTMFSIDEVSISQVVIIISQIKVNCMTVVRLKSIDAHGSGHFGDFPFQSGAHSTSNVEQVRVGKAIYKAGSLFNHSCQPNVHAYFLSRALYLRTTNVVAAGSQLELSYGPQVGLWDCKDRLNFLKNEYAFHCLCTGCSEVNRSDLVLNAFHCVNPNCSGAVLESRVLDCEMQKIKHFPIPDHVDKNDDIYEVCHHVFKQNGKSIHIQPGYCLKCGSYCDLESSHAAVGKALACITRLQDAILSQQISSITISDALRSLKLLRLNLHAYNKLTAEAEDSIAQAFCLVGELQLSLDHCKASIQILEKLYDTDDIVIAYELVKLSSIQLSLDDGTAVESISRIDDIFSRYYGLHADLVFPYLQYLRREVEKFSMKALQ* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1180 786 ProSiteProfiles TPR repeat profile. 140 173 IPR019734 GO:0005515
Gso6g1180 786 SUPERFAMILY SET domain 218 545 IPR046341 -
Gso6g1180 786 SMART tpr_5 140 173 IPR019734 GO:0005515
Gso6g1180 786 SMART tpr_5 684 717 IPR019734 GO:0005515
Gso6g1180 786 SMART tpr_5 63 96 IPR019734 GO:0005515
Gso6g1180 786 SMART tpr_5 106 139 IPR019734 GO:0005515
Gso6g1180 786 SUPERFAMILY TPR-like 59 189 IPR011990 GO:0005515
Gso6g1180 786 Pfam SET domain 226 520 IPR001214 GO:0005515
Gso6g1180 786 ProSiteProfiles SET domain profile. 215 520 IPR001214 GO:0005515
Gso6g1180 786 Gene3D Tetratricopeptide repeat domain 39 195 IPR011990 GO:0005515
Gso6g1180 786 Gene3D Tetratricopeptide repeat domain 528 785 IPR011990 GO:0005515
Gso6g1180 786 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 777 - -
Gso6g1180 786 Gene3D SET domain 413 519 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1180 Gso-Chr6 11468085 11480699 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso6g1180 SET 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1180 K24634 - gmx:100783548 1556.19