Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1179 ATGGCTCCTCAAAACGTTTTACAAATGGTAGACACTAATATTGCTGATGAAAAAGATGAGCCTAAGAAGAAAGTGGTTAAAACTTTGTCATTCTTCAAACTCATGAGCTATGCTGACGTGATAGACTGGATTCTGATGGGTTTGGGAGGTCTAGGTTCGGTTGTGCATGGCATGGCATTTCCTGTTGGGTATCTCTTGTTGGGAAAAGCTCTTAATGCTTTTGGAAACAATATCAACGACATAGATGCCATGGTTAATGCTCTTAAAAAGGTTGTTCCATATGTGTGGTATATGGCCATCGCAACATTTCCTGCTGGGGTACTTGAGATTAGTTGTTGGATGTATGCAAGTGAAAGACAGTTATTTCAGCTAAGATTAGCATATCTAAGAGCAGTCCTCAACCAAGAGATAGGTGCTTTTGATACAGAATTAACAAGTGCAAAAGTCATCAGTGGAATAAGCAAGCACATGAGTGTCATACAAGATGCCATTGGTGAGAAGTTGGGTCACTTCACCTCTAGCTGTGCAACTTTCTTTGCTGGAATTGTGATTGCTGCCATATGCTGTTGGGAAGTAACGCTTCTTTGTTTAGTGGTTGTTCCGCTTATTCTTATAATAGGGGCAACTTACACCAAGAAAATGAACAGCATATCAACCACCAAAATGCTTTTCCATTCTGAAGCTACATCTATGATAGAGCAGACAATATCACAAATAAAAACAGTTTATGCTTTTGTTGGAGAGAGCTCTGCAATCAAATCCTTTACAGAGAACATGGAAAAACAATATGTTATAAGCAAAGGGGAGGCACTTGTGAAGGGAGTTGGGACAGGGATGTTTCAAACAGTGAGTTTCTGTTCTTGGGCTCTCATTGTATGGGTTGGAGCTGTTGTGGTCAGAGCCGGAAGAGCAACCGGAGGAGACATAATAACTGCAGTGATGAGTATTCTCTTTGGTGCCATATCTCTCACTTATGCAGCACCAGACATGCAAATATTTAATCAGGCAAAAGCTGCAGGATACGAAGTTTTTCAAGTGATCCAAAGAAAGCCTCTAATAAGTAATGAATCAGAAGGGATGATGCCTAGCAAAATCAAAGGTGACATTGAATTACGAGAAGTTCACTTTTCCTACCCATCACGGCCAGAGAAAGCAATCCTTCAAGGACTGTCCTTGTCAATTCCAGCAGGAAAGACAATAGCACTAGTTGGTAGCAGTGGCTGTGGAAAGAGCACTGTTATTTCCCTGGTTAGCAGATTTTATGATCCCTCGAGAGGAGAAATTTTTATTGATCATCACAATATAAAGGATCTCAATCTGAAGTTCCTGCGAAGAAATATAGGGGCTGTTTCCCAAGAACCATCACTCTTTGCTGGCACCATCAAGGATAATTTGAAAGTGGGAAAAATGGACGCAGATGATCAACAAATTCAGAAGGCAGCAGTAATGTCAAATGCACACTCTTTCATATCACAGCTGCCTAATCAGTACCTAACAGAGGTAGGAGAAAGGGGTGTCCAATTATCAGGAGGCCAGAAACAGAGAATTGCAATAGCAAGAGCCATTCTGAAAAATCCTCCCATCCTTTTGCTTGATGAGGCCACTAGTGCCCTCGATTCAGAGTCTGAAAAGCTGGTTCAAGAAGCACTTGAGACAGCTATGCAGGGAAGGACTGTCATCTTGATTGCACACAGGCTCTCAACAGTTGTAAATGCAAATATGATTGCTGTAGTAGAGAATGGACAAGTTGCCGAGACAGGAACACACCAGAGTTTGTTGGACACAAGCAGATTCTATAGTACATTATGCAGCATGCAGAACCTTGAACCAGTTCCTGAATCTAGAGCTATAGTTTCCAAGAATAGAAGTGTATGTGAAGAAGATTTTCTTGATGAAACTAGACCACTAGTAGAGGTGCAGGGAGAGGTCCAAATAAATATCACTGAGCCTTCTGTGCTAAAGGAACAGAACAAAATGAGCAGCGGAGAAAGACATATATTTTTCAGAATTTGGTTTGGTTTAAAAAAGAGGGAGCTGGTGAAGATTGCTATTGGCTCATTTGCAGCAGCTTTCTCTGGAATCTCAAAGCCATTTTTTGGGTTCTTCATCATCACTATTGGAGTAGCATACTTCGATGAAGATGCAAAACAAAAAGTTGGATTTTATTCAGCCATCTTCGCTGCAGTAGGGTTGCTTTCATTATTCAGTCACACCTTCCAGCATTACTTCATTGGAGTTGTTGGAGAAAAGGCCATGGCAAATCTAAGGCGTGCTCTGTATTCAGGTGTGCTACGTAATGAAGTAGGCTGGTTTGACAAATCAGAGAATACTGTTGGTTCATTGACTTCACGCATTACCAGTGACACTGCCATGGTCAAAGTTATCATTGCTGATCGGATGTCTGTAATTCTGCAATGTGTTTCCTCCATACTCATAGCAACAGTTGTCAGCATGGCTGTCAACTGGAGAATGAGTTTGGTAGCTTGGGCTGTGATGCCCTGCCACTTCATAGGTGGTCTCATTCAAGCCAAGTCTGCCAAAGGATTTTCAGGTGACTACTCTGCTGCACATTCTGAGCTTGTTGCTCTTGCATCTGAGTCCACAACCAACATAAGGACAGTTGCATCATTCTGTCATGAAGAACAAGTACTGGGGAAAGCCAAAACATCCCTGGAAATTCCAAAGAAAAAGTATAGGAAAGAAAGTATCAAATATGGGATCATTCAAGGCTTCTCCCTTTGCTTGTGGAACATTGCACATGCTGTTGCTTTGTGGTACACAACAATTCTGATTGACAGAGGTCAAGCCACCTTTAAAAATGGAATAAGATCATACCAAATTTTTTCTCTAACAGTTCCTTCCATCACAGAATTATACACATTGATCCCAACTGTCATCTCTGCTATCAGTATACTAACTCCAGCATTCAAAACCCTTGACCGTAAAACTGAAATTGAACCAGACACACCAGATGATTCCCAACCTGAGAGGATCCATGGAAAAGTAGAATTTGAAAATGTAAAATTCAACTACCCTTCAAGACCCACAGTCACTGTTCTTGACAATTTTAGTTTACAAATTGAAGCTGGATTGAAGGTGGCTTTTGTAGGACCAAGTGGAGCTGGAAAATCCTCTGTTTTGGCCCTTTTACTAAGATTTTATGATCCACAGGCAGGAAAGGTATTAATTGATGGGAAAAACATACAGAAATATAATATAAGATGGTTAAGGACACAAATAGGACTGGTACAACAAGAGCCACTGCTTTTTAATTGCTCGGTTAGAGACAATATTTGCTATGGCAATAGTGGGGCTTCTGAAAGTGAAATAGTGGAGGTTGCTAAAGAAGCAAACATACATGAATTTGTAAGTAATCTACCAAATGGATATAACACTGTTGTTGGAGAGAAAGGCTGCCAGTTTTCCGGAGGACAAAAGCAAAGAATAGCTATTGCCAGAACATTACTAAAAAAGCCTGCAATATTACTCCTAGACGAAGCAACAAGTGCTCTTGATGCTGAGTCTGAAAGAATTATAGTGAATGCTTTAAAAGCAATACATCTGAAGGAAGACAGTGGCTTGTGTTCAAGAACCACCCAGATCACAGTAGCTCATAGGCTTTCCACAGTAATAAACTCAGATACTATAGTTGTCATGGATAAAGGTAAAGTTGTAGAGATGGGTTCCCACTCAACCCTAATAGCAGCAGAAGCAGGACTTTATTCAAGGATATTCAGGTTACAGAGCTTTGAAGAAACTTCATAG 3765 0.4072 MAPQNVLQMVDTNIADEKDEPKKKVVKTLSFFKLMSYADVIDWILMGLGGLGSVVHGMAFPVGYLLLGKALNAFGNNINDIDAMVNALKKVVPYVWYMAIATFPAGVLEISCWMYASERQLFQLRLAYLRAVLNQEIGAFDTELTSAKVISGISKHMSVIQDAIGEKLGHFTSSCATFFAGIVIAAICCWEVTLLCLVVVPLILIIGATYTKKMNSISTTKMLFHSEATSMIEQTISQIKTVYAFVGESSAIKSFTENMEKQYVISKGEALVKGVGTGMFQTVSFCSWALIVWVGAVVVRAGRATGGDIITAVMSILFGAISLTYAAPDMQIFNQAKAAGYEVFQVIQRKPLISNESEGMMPSKIKGDIELREVHFSYPSRPEKAILQGLSLSIPAGKTIALVGSSGCGKSTVISLVSRFYDPSRGEIFIDHHNIKDLNLKFLRRNIGAVSQEPSLFAGTIKDNLKVGKMDADDQQIQKAAVMSNAHSFISQLPNQYLTEVGERGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDSESEKLVQEALETAMQGRTVILIAHRLSTVVNANMIAVVENGQVAETGTHQSLLDTSRFYSTLCSMQNLEPVPESRAIVSKNRSVCEEDFLDETRPLVEVQGEVQINITEPSVLKEQNKMSSGERHIFFRIWFGLKKRELVKIAIGSFAAAFSGISKPFFGFFIITIGVAYFDEDAKQKVGFYSAIFAAVGLLSLFSHTFQHYFIGVVGEKAMANLRRALYSGVLRNEVGWFDKSENTVGSLTSRITSDTAMVKVIIADRMSVILQCVSSILIATVVSMAVNWRMSLVAWAVMPCHFIGGLIQAKSAKGFSGDYSAAHSELVALASESTTNIRTVASFCHEEQVLGKAKTSLEIPKKKYRKESIKYGIIQGFSLCLWNIAHAVALWYTTILIDRGQATFKNGIRSYQIFSLTVPSITELYTLIPTVISAISILTPAFKTLDRKTEIEPDTPDDSQPERIHGKVEFENVKFNYPSRPTVTVLDNFSLQIEAGLKVAFVGPSGAGKSSVLALLLRFYDPQAGKVLIDGKNIQKYNIRWLRTQIGLVQQEPLLFNCSVRDNICYGNSGASESEIVEVAKEANIHEFVSNLPNGYNTVVGEKGCQFSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERIIVNALKAIHLKEDSGLCSRTTQITVAHRLSTVINSDTIVVMDKGKVVEMGSHSTLIAAEAGLYSRIFRLQSFEETS* 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1179 1254 Gene3D - 992 1253 IPR027417 -
Gso6g1179 1254 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 343 - -
Gso6g1179 1254 Pfam ABC transporter transmembrane region 47 320 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso6g1179 1254 Pfam ABC transporter transmembrane region 684 946 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso6g1179 1254 PANTHER ABC TRANSPORTER B FAMILY 17 1251 - -
Gso6g1179 1254 Gene3D ABC transporter type 1, transmembrane domain 33 963 IPR036640 GO:0005524|GO:0016021
Gso6g1179 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 606 IPR027417 -
Gso6g1179 1254 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524
Gso6g1179 1254 SMART AAA_5 396 588 IPR003593 -
Gso6g1179 1254 SMART AAA_5 1029 1223 IPR003593 -
Gso6g1179 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 335 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso6g1179 1254 CDD ABC_MTABC3_MDL1_MDL2 369 606 - -
Gso6g1179 1254 SUPERFAMILY ABC transporter transmembrane region 674 988 IPR036640 GO:0005524|GO:0016021
Gso6g1179 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 605 IPR003439 GO:0005524
Gso6g1179 1254 CDD ABC_MTABC3_MDL1_MDL2 1002 1248 - -
Gso6g1179 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 683 967 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso6g1179 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 994 1248 IPR027417 -
Gso6g1179 1254 ProSitePatterns ABC transporters family signature. 1141 1155 IPR017871 GO:0005524
Gso6g1179 1254 Pfam ABC transporter 1020 1169 IPR003439 GO:0005524
Gso6g1179 1254 Pfam ABC transporter 387 536 IPR003439 GO:0005524
Gso6g1179 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1002 1246 IPR003439 GO:0005524
Gso6g1179 1254 CDD ABC_6TM_Pgp_ABCB1_D2_like 672 985 - -
Gso6g1179 1254 PANTHER BRACHYTIC2 17 1251 - -
Gso6g1179 1254 Gene3D - 359 607 IPR027417 -
Gso6g1179 1254 SUPERFAMILY ABC transporter transmembrane region 33 351 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1179 Gso-Chr6 11454544 11463699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1179 19 1253 Calmodulin-binding Proteins AT2G36910 41.042 0.0 962
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1179 K05658 - zju:107414909 1812.35