Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1170 ATGAAGACGATTCTATCGTCCGAGACCATGAATATTCCCGACGGCGTGAGCATCAAGGTTCACGCTAAGGTTATCGAGGTTGAGGGCCCTCGTGGAAAACTCGTGCGAGACTTCCACCATCTGAACTTGGACTTCCAACTTATTACCGACGATGGCGGTAAAAGGAAGCTCAAGATTGATTCTTGGTTTGGTTCTCGTAAAACCTCCGCCGCCATCCGCACCGCCCTCAGCCACGTTGAGAATTTGATCACCGGCGTCACCAAGGGATACCGATACAAAATGAGATTCGTGTACGCTCATTTTCCTATCAACGCTAGCATTGGCAACAACAGCAAGTCCATCGAGATCAGAAATTTCCTCGGCGAGAAGAAGGTGAGGAAAGTGGACATGCTTGAGGGCGTGTCGGTTGTTAGATCTGAAAAGGTCAAAGATGAATTGGTCTTGGATGGAAACGACATTGAACTTGTTTCTAGGTCATGTGCTCTCATTAACCAGAAATGTCATGTTAAGAACAAGGATATCCGGAAGTTTCTTGATGGTATTTATGTCAGCGAGAAGGGAACAATATTGGAAGAGTAG 579 0.4646 MKTILSSETMNIPDGVSIKVHAKVIEVEGPRGKLVRDFHHLNLDFQLITDDGGKRKLKIDSWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASIGNNSKSIEIRNFLGEKKVRKVDMLEGVSVVRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTILEE* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1170 192 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gso6g1170 192 ProSitePatterns Ribosomal protein L6 signature 2. 165 186 IPR002359 GO:0003735|GO:0005840|GO:0006412
Gso6g1170 192 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gso6g1170 192 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gso6g1170 192 Pfam Ribosomal protein L6 102 180 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gso6g1170 192 SUPERFAMILY Ribosomal protein L6 90 186 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gso6g1170 192 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 192 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gso6g1170 192 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gso6g1170 192 Gene3D - 90 192 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gso6g1170 192 PANTHER 60S RIBOSOMAL PROTEIN L9-1 1 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1170 Gso-Chr6 11398592 11399614 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1170 1 192 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 86.010 7.29e-122 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1170 K02940 - gmx:100810611 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1510 14 46425582 46429667 Gso6g1170 6 11398592 11399614 PCT
Gso2g1801 2 41796447 41799506 Gso6g1170 6 11398592 11399614 PCT
Gso6g1170 6 11398592 11399614 Gso14g1510 14 46425582 46429667 PCT
Gso6g1170 6 11398592 11399614 Gso2g1801 2 41796447 41799506 PCT